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Consensus sequences of all strains aligned against the reference Pacific Biosciences sequence of JF4335 using BLAST Ring Image Generator. Most prevalent gaps (labeled as island 1–9) were inspected for genes potentially involved in virulence or pathogenicity. None of these genes were regarded as such. The gaps mostly represent fragments of transposases and fragments of phage DNA. In red the phages of JF4335, identified with PHASTER (Arndt et al., 2016), are indicated.
