TABLE 1 .

Genomic sequence assembly overview

Strain	Yr isolated	Specimen type	AZT MIC (mg/liter)	23S rRNA mutationsa		MLST	Assembly size (bp)	Fold coverage	% G+C	No. of contigs	N50 (bp)	Size of largest contig (bp)	GenBank accession no.
				A2059G	C2611T
NGSJH7	2008	Urethral swab	>256	+ (3/4)	−	ST1580	2,075,384	173×	52.69	120	33,484	68,114	NAGL00000000
NGSJH11	2014	Urethral swab	>256	+	−	ST1580	2,079,908	116×	52.76	145	22,826	139,128	NAGP00000000
NGSJH13	2008	Urethral swab	16	−	−	Novel STb	2,139,248	147×	52.63	131	30,939	106,477	NAGR00000000
NGSJH16	2008	Urethral swab	16	−	+	ST7822	2,120,180	166×	52.54	125	35,303	108,373	NAGT00000000
NGSJH5	2011	Urethral swab	12	−	+	ST9363	2,097,066	130×	52.75	147	23,449	75,854	NAGK00000000
NGSJH9	2014	Urethral swab	8	−	+ (2/4)	ST1901	2,120,291	147×	52.5	122	32,984	105,727	NAGN00000000
NGSJH12	2014	Urethral swab	8	−	+	ST1587	2,131,824	114×	52.62	121	26,278	82,135	NAGQ00000000
NGSJH8	2011	Urethral swab	2	−	−	ST1579	2,090,734	158×	52.69	135	23,447	105,772	NAGM00000000
NGSJH4	2012	Urethral swab	2	−	+	ST9363	2,053,541	130×	52.83	119	27,039	108,385	NAGJ00000000
NGSJH1	2009	Urethral swab	1	−	−	ST1901	2,127,937	72×	52.47	131	27,371	108,554	NAGH00000000
NGSJH2	2009	Urethral swab	1	−	−	ST1582	2,108,844	186×	52.65	105	35,856	175,104	NAGI00000000
NGSJH10	2014	Urethral swab	1	−	−	ST9363	2,075,749	161×	52.69	111	34,949	106,004	NAGO00000000
NGSJH14	2014	Urethral swab	1	−	−	ST9363	2,069,975	173×	52.73	113	35,282	139,973	NAGS00000000
NGSJH17	2014	Urethral swab	1	−	−	ST7363	2,125,521	146×	52.54	121	34,743	105,124	NAGU00000000

^a+, supported by 100% of mutant calls; (3/4), supported by 75% of mutant calls; (2/4), supported by 50% of mutant calls; −, wild type.

^bAllelic profile: abcZ, 59; adk, 39; aroE, 67; fumC, 156; gdh, 150; pdhC, 153; pgm, 133.