Table 1:

Metrics of the SMARTdenovo S288C assemblies before and after polishing with Nanopolish using R7 reads. The Nanopore 2D reads were aligned to the most continuous SMARTdenovo assembly. The alignment was given as input to Nanopolish to correct assembly errors. Metrics were obtained by aligning the pre-polishing and post-polishing version of the assembly to the reference genome using Quast.

	SMARTdenovo pre-polishing	SMARTdenovo post-polishing
# contigs	26	26
Cumulative size	12 018 244	12 204 373
N50	771 149	782 423
N90	238 808	242 444
L50	7	7
L90	16	16
# mismatches	6970	1930
# insertions	7735	7707
# deletions	128 050	17 445
# deletions in homopolymers	79 152	6869
# genes	6251 + 24 partial	6273 + 15 partial
# genes without indels	429	2590