Table 3:

Assessments (AUC values) of peptide binding affinity prediction with specific HLA alleles and peptide length by PSSMHCpan, NetMHC, NetMHCpan, PickPocket, Nebula, sNebula, and SMM.

HLA	Length	PSSMHCpan	NetMHC*	NetMHCpan*	PickPocket*	Nebula*	sNebula*	SMM*
A*0101	9	0.96	0.98	0.98	0.94	0.82	0.97	0.97
A*0101	10	0.94	0.98	0.97	0.94	0.69	0.96	0.98
A*0201	9	0.93	0.94	0.94	0.94	0.88	0.93	0.94
A*0201	10	0.96	0.96	0.97	0.96	0.94	0.97	0.96
B*0702	9	0.95	0.97	0.97	0.96	0.81	0.95	0.97
B*0702	10	0.94	0.98	0.97	0.96	0.80	0.93	0.98
A*0202	9	0.96	0.99	0.99	0.97	0.53	0.89	0.98
A*0203	9	0.97	0.98	0.99	0.98	0.85	0.97	0.98
A*0203	10	0.95	0.98	0.98	0.95	0.53	0.96	0.97
A*6802	9	0.93	0.98	0.98	0.95	0.80	0.95	0.97
A*6802	10	0.91	0.96	0.96	0.92	0.78	0.97	0.97
B*5101	10	0.82	0.89	0.90	0.87	0.72	0.96	0.89
B*5301	9	0.93	0.98	0.98	0.96	0.55	0.88	0.98
B*5301	10	0.91	0.97	0.95	0.92	0.69	0.91	0.97
B*5401	9	0.91	0.98	0.97	0.95	0.51	0.89	0.98
B*5401	10	0.87	0.97	0.97	0.96	0.53	0.88	0.99
B*5701	9	0.98	0.99	0.99	0.98	0.94	0.99	0.99

*Training data are substantially overlapped with validation data.