TABLE 2.
Names, nearest reference sequences, and frequency of recovery for clones recovered at least 10 times
| Clone name | Nearest cpn60 neighbor | GenBank accession no. | % DNA identity | Frequency (no. of clones)
|
|||
|---|---|---|---|---|---|---|---|
| Corn | Barley | Wheat | Total | ||||
| c10_c06 | Lactobacillus amylovorus ATCC 33198 | AY562571 | 99.8 | 269 | 102 | 208 | 579 |
| c02_a03 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 17 | 97 | 52 | 166 | |
| c01_h12 | Lactobacillus amylovorus ATCC 33198 | 99.3 | 15 | 92 | 37 | 144 | |
| c13_g09 | Lactobacillus amylovorus ATCC 33198 | 99.3 | 26 | 41 | 76 | 143 | |
| c13_h04 | Lactobacillus amylovorus ATCC 33198 | 99.5 | 48 | 37 | 54 | 139 | |
| c02_e07 | Lactobacillus amylovorus ATCC 33198 | 99.1 | 7 | 58 | 26 | 91 | |
| c02_b12 | Lactobacillus johnsonii NCC 533 | NC_005362 | 99.1 | 46 | 22 | 23 | 91 |
| c01_g02 | Clostridium disporicum ATCC 43838 | AY562569 | 84.5 | 43 | 10 | 33 | 86 |
| c03_c06 | Lactobacillus reuteri (Biologics) | AY562572 | 97.8 | 33 | 19 | 21 | 73 |
| c01_f10 | Lactobacillus vaginalis ATCC 49540 | AY123651 | 88.9 | 8 | 21 | 33 | 62 |
| c09_f09 | Lactobacillus amylovorus ATCC 33198 | 99.8 | 5 | 42 | 14 | 61 | |
| c01_c10 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 19 | 19 | 21 | 59 | |
| c13_h06 | Lactobacillus reuteri (Biologics) | 97.6 | 29 | 11 | 19 | 59 | |
| c13_h12 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 17 | 9 | 30 | 56 | |
| c05_h11 | Streptococcus alactolyticus ATCC 4307 | AY123648 | 100.0 | 1 | 25 | 4 | 30 |
| c02_c09 | Clostridium disporicum ATCC 43838 | 84.4 | 18 | 2 | 7 | 27 | |
| c02_b09 | Lactobacillus amylovorus ATCC 33198 | 99.5 | 13 | 4 | 7 | 24 | |
| c13_g07 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 9 | 4 | 9 | 22 | |
| c02_d10 | Lactobacillus johnsonii NCC 533 | 98.9 | 13 | 6 | 3 | 22 | |
| c13_d02 | Lactobacillus amylovorus ATCC 33198 | 99.3 | 4 | 12 | 6 | 22 | |
| c02_d04 | Lactobacillus johnsonii NCC 533 | 99.3 | 11 | 4 | 6 | 21 | |
| c06_a02 | Lactobacillus crispatus CECT 4840T | AY562570 | 99.6 | 3 | 14 | 2 | 19 |
| c09_f02 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 2 | 14 | 2 | 18 | |
| c13_h07 | Lactobacillus vaginalis ATCC 49540 | 88.7 | 6 | 12 | 0 | 18 | |
| c11_g09 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 9 | 3 | 5 | 17 | |
| c02_e05 | Lactobacillus reuteri (Biologics) | 96.6 | 11 | 0 | 5 | 16 | |
| c12_h03 | Lactobacillus reuteri (Biologics) | 97.5 | 7 | 2 | 4 | 13 | |
| c03_b02 | Lactobacillus crispatus CECT 4840T | 99.6 | 1 | 9 | 3 | 13 | |
| b02_b02 | Lactobacillus amylovorus ATCC 33198 | 99.3 | 0 | 8 | 4 | 12 | |
| c12_f06 | Lactobacillus johnsonii NCC 533 | 98.9 | 2 | 5 | 5 | 12 | |
| c01_d01 | Lactobacillus amylovorus ATCC 33198 | 99.8 | 3 | 3 | 4 | 10 | |
| c02_d09 | Lactobacillus johnsonii NCC 533 | 98.7 | 4 | 2 | 4 | 10 | |
| c10_d08 | Lactobacillus amylovorus ATCC 33198 | 99.6 | 5 | 2 | 3 | 10 | |