Table 1.
Cancer Type | Numbera | Normalb | Cancerb | log2FoldChangec | Adjusted P valued |
---|---|---|---|---|---|
BLCA | 19 | 637.89 | 25.25 | −4.66 | <0.0001 |
BRCA | 113 | 600.86 | 74.84 | −3.01 | <0.0001 |
CHOL | 9 | 427.26 | 107.93 | −1.98 | <0.0001 |
CRC | 32 | 797.1 | 38.74 | −4.36 | <0.0001 |
ESCA | 11 | 816.82 | 40.15 | −4.35 | 0.04 |
HNSC | 43 | 418.62 | 31.68 | −3.72 | <0.0001 |
KIRC | 72 | 529.9 | 63.99 | −3.05 | <0.0001 |
KIRP | 72 | 439.06 | 80.07 | −2.46 | <0.0001 |
LUAD | 58 | 300.09 | 44.4 | −2.76 | <0.0001 |
LUSC | 51 | 309.17 | 27.88 | −3.47 | <0.0001 |
PRAD | 52 | 287.12 | 81.15 | −1.82 | <0.0001 |
STAD | 32 | 1520.86 | 154.21 | −3.3 | <0.0001 |
THCA | 59 | 1423.74 | 382.68 | −1.9 | <0.0001 |
UCEC | 7 | 1267.48 | 87.89 | −3.85 | <0.0001 |
Abbreviations: BLCA bladder urothelial carcinoma, BRCA breast invasive carcinoma, CHOL cholangiocarcinoma, CRC colorectal cancer, ESCA esophageal carcinoma, HNSC head and neck squamous cell carcinoma, KIRC kidney renal clear cell carcinoma, KIRP kidney renal papillary cell carcinoma, LUAD lung adenocarcinoma, LUSC lung squamous cell carcinoma, PRAD prostate adenocarcinoma, STAD stomach adenocarcinoma, THCA thyroid carcinoma, UCEC uterine corpus endometrial carcinoma
aNumber of paired normal and cancer tissues included in this study. We only considered the cancer type with six or more samples for differential expression analysis
bMean expression level of normal or cancer tissue
cFold change is calculated by mean expression level of Cancer/Normal
d P value was performed by DEGSeq package for R/Bioconductor and adjusted P value was counducted according to false discovery rate