Table 1.
GeneHancer content
| Enhancer source | Total number of elements | Mean length (bp) | SD length | Total genome coverage (bp) | Total genome coverage (%) | PMID |
|---|---|---|---|---|---|---|
| Ensembl | 213 260 | 1080 | 1337 | 2.30E+08 | 7.18 | 25887522 |
| FANTOM | 42 979 | 289 | 163 | 1.24E+07 | 0.387 | 24670763 |
| VISTA | 1746 | 1784 | 1002 | 3.09E+06 | 0.0964 | 17130149 |
| ENCODEa | 176 154 | 1644 | 2071 | 2.90E+08 | 9.02 | 22955616 |
| All sources combined | 434 139 | 1233 | 1672 | 3.98E+08 | 12.4 | This study |
| GeneHancer | 284 834 | 1397 | 1934 | 3.98E+08 | 12.4 | This study |
Basic statistics of GeneHancer mined enhancer entities from four sources along with the integrated candidate enhancers. The ‘All sources’ row describes the combination of all mined enhancer elements before applying the GeneHancer unification algorithm.
a
Data in the ENCODE row represent 1 742 514 original enhancer elements, which underwent pre-processing (see Materials and methods).