Table I.
DMR | Observed to expected CpG ratio (Obs/Exp CpG)a | No. of DMR | Hypermethylated DMR (%) | Hypomethylated DMR (%) |
---|---|---|---|---|
Total DMR | Obs/Exp CpG ≥60% | 292 | 2.7 | 97.3 |
60% < Obs/Exp CpG <30% | 364 | 55.5 | 44.5 | |
Obs/Exp CpG ≤30% | 624 | 76.3 | 23.7 | |
DMR in promoter region | Obs/Exp CpG ≥60% | 215 | 1.9 | 98.1 |
60% < Obs/Exp CpG <30% | 114 | 50.9 | 49.1 | |
Obs/Exp CpG ≤30% | 194 | 77.8 | 22.2 | |
DMR in gene body | Obs/Exp CpG ≥60% | 60 | 6.7 | 93.3 |
60% < Obs/Exp CpG <30% | 223 | 58.7 | 41.3 | |
Obs/Exp CpG ≤30% | 377 | 75.3 | 24.7 | |
DMR in CDS end of the gene | Obs/Exp CpG ≥60% | 17 | 0 | 100 |
60% < Obs/Exp CpG <30% | 27 | 48.1 | 51.9 | |
Obs/Exp CpG ≤30% | 53 | 77.4 | 22.6 |
Observed to expected CpG ratio = number of CpG x (DMR length) / (number of C x number of G).