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. Author manuscript; available in PMC: 2017 Jun 13.
Published in final edited form as: Behav Genet. 2011 Jan 5;41(1):77–89. doi: 10.1007/s10519-010-9434-1

Table 5.

KIAA0319 Cope haplotype with JA04 and 13 bp repeat

Haplotype—marker alleles
Haplotype frequency Transmission
rs4504469 rs6935076 JA04 rs71815143 Obs Exp. Var (O-E) χ2 p-value (1 d.f.)
1 (G) 1 (G) 7 (17 GT) 2 (del) 0.056 21.509 18.606 7.4419 1.1324 0.2873
1 (G) 1 (G) 8 (18 GT) 2 (del) 0.135 43.886 48.329 21.597 0.9141 0.3390
1 (G) 2 (A) 1 (11 GT) 2 (del) 0.156 47.668 56.211 24.346 2.9980 0.0834
1 (G) 2 (A) 2 (12 GT) 2 (del) 0.130 45.918 47.691 17.601 0.1784 0.6727
2 (A) 1 (G) 14 (25 GT) 1 (ins) 0.064 31.559 22.613 7.4282 10.772 0.0010
2 (A) 1 (G) 16 (27 GT) 1 (ins) 0.053 16.467 17.533 10.130 0.1123 0.7376

Global χ2 (39 d.f.) = 80.518; p = 0.0001

χ2 on haplotypes with freq >10% (3 d.f.) = 5.6353; p = 0.1308

χ2 on haplotypes with freq >5% (6 d.f.) = 15.447; p = 0.0171