Table 2.
Bacterial identification results from 23 positive blood culture bottles based on culture and NGS of 16S-23S rRNA region.
| Sample | Patient | Bottle | Culture (Maldi-TOF MS) | NGS of 16S-23S rRNA region (% of total reads) |
|---|---|---|---|---|
| BC01 | Patient A | anaerobic | Escherichia coli | Escherichia coli (100%) |
| BC02 | Patient B | aerobic | Streptococcus dysgalactiae | Streptococcus dysgalactiae (100%) |
| BC03 | Patient C | anaerobic | Klebsiella oxytoca | Klebsiella oxytoca (100%) |
| BC05 | Patient D | aerobic | Staphylococcus heamolyticus | Staphylococcus haemolyticus (100%) |
| BC06 | Patient E | anaerobic | Staphylococcus hominis | Staphylococcus hominis (100%) |
| BC07 | Patient F | aerobic | Staphylococcus capitis | Staphylococcus capitis (100%) |
| BC08 | Patient G | anaerobic | Streptococcus pneumoniae | Streptococcus pneumoniae (100%) |
| BC09 | Patient H | aerobic | Staphylococcus epidermidis | Staphylococcus epidermidis (100%) |
| BC10 | Patient H | anaerobic | Staphylococcus hominis | Staphylococcus hominis (100%) |
| BC11 | Patient I | anaerobic | Bacteroides sp. | Bacteroides fragilis (100%) |
| BC12 | Patient J | aerobic | Staphylococcus hominis | Staphylococcus hominis (100%) |
| BC13 | Patient K | aerobic | Staphylococcus aureus | Staphylococcus aureus (100%) |
| BC14 | Patient L | aerobic | Klebsiella oxytoca | Klebsiella oxytoca (100%) |
| BC15 | Patient M | anaerobic | Streptococcus pneumoniae | Streptococcus pneumoniae (100%) |
| BC16 | Patient N | aerobic | Escherichia coli | Escherichia coli (100%) |
| BC17 | Patient O | anaerobic | Staphylococcus aureus | Staphylococcus aureus (100%) |
| BC18 | Patient P | anaerobic | Streptococcus pneumoniae | Streptococcus pneumoniae (100%) |
| BC19 | Patient Q | aerobic | Escherichia coli, Streptococcus infantis | Escherichia coli (69.3%), Streptococcus lutetiensis (30.7%) |
| BC20 | Patient Q | anaerobic | Escherichia coli | Escherichia coli (100%) |
| BC21 | Patient R | aerobic | Escherichia coli | Escherichia coli (100%) |
| BC22 | Patient R | anaerobic | Bacteroides vulgatus | Bacteroides dorei (100%) |
| BC23 | Patient S | aerobic | Staphylococcus hominis | Staphylococcus hominis (100%) |
| BC24 | Patient S | aerobic | Staphylococcus epidermidis | Staphylococcus epidermidis (100%) |