Table 1.

Predicted MHCII-restricted PVM epitopes.

Peptide sequence	Protein1	Position		Percentile rank2
		Start	End
CNLLRPFVQAAKFIH	NS1	57	71	15,14
QTLTHWFTKNIVFSS	NS1	77	91	18,73
MNKFTQTISKPATIL	NS2	5	19	4,62
LLIEKFQPSLQNITR	NS2	49	63	6,43
IIGSYKGAPRNRELF	NP	333	347	9,68
VEGLFSGLFMNAYGA	NP	239	253	10,75
TIMVATAGPTTARDE	P	198	212	1
LRSSFKLPSPRVAAN	P	51	65	1,52
LLQILLNPLLPLPLH	P2	22	36	5
LTIRNTARSHAAQMI	P2	64	78	6,87
PKNMLYTVPSITPTN	M	122	136	1,89
TVWIPMFQTSLPKNS*	M	33	47	4,95
CTVHPNHPPPSYGVN	SH	64	78	4,4
QKLSFNKPQARQLYP	SH	98	112	8,59
MGRNFEVSGSITNLN	G	1	15	2,16
TIPRFTKPPTKTATH	G	94	108	4,44
LVIFNTKPIHPNTLT	F	11	25	5,18
ISTSKTYVSTAVLTT	F	358	372	6,99
KYSHKYWEWPLKTLM	M2-1	21	35	11,73
NRIYRFLDTNTDAMS	M2-1	43	57	15,75
NLTYDGSGPSTIIDA	M2-2	44	58	0,65
MIRLPKYYPAILHKM	M2-2	22	36	7,14
QHMFLPNHITPAQYI	L	1378	1392	2,02
VPMQFGGADPNVIYR	L	926	940	2,54

¹PVM proteins: Non-structural protein (NS1 and 2), Nucleoprotein (NP), Phosphoprotein (P, P2), Matrix protein (M, M2-1, M2-2), Small hydrophobic protein (SH), Attachment glycoprotein (G), Fusion protein (F), RNA polymerase (L).

²The MHCII binding predictions were performed using the IEDB analysis source Consensus tool. The lower the percentile rank, the better the binders.

^*Shows 100% homology to PVM strain 15; the underlined region delineates the core epitope M_37–47, contained within the M_33–47 sequence.