Table 2.
Serotyping clinical samples.
| Sample ID | Sequencing mode | Category | Diagnosed serotype | Total reads | Number of mapped reads | Number of reads mapped to the corresponding serotype | Percent ratio | Average sequence identity |
|---|---|---|---|---|---|---|---|---|
| a | ||||||||
| B24 | 2D | Clinical representative | DENV1 | 3,156 | 1,091 | 1,087 | 100% | 74% |
| B49 | 2D | Clinical representative | DENV2 | 4,680 | 3,610 | 3,534 | 98% | 78% |
| B54 | 2D | Clinical representative | DENV3 | 5,598 | 2,677 | 2,666 | 100% | 80% |
| B17 | 2D | Clinical representative | DENV4 | 4,220 | 2,846 | 2,842 | 100% | 76% |
| b | ||||||||
| 01 | 2D | Clinical | DENV1 | 243 | 132 | 130 | 98% | 77% |
| 11 | 2D | Clinical | DENV1 | 867 | 525 | 522 | 99% | 77% |
| 17 | 2D | Clinical | DENV1 | 600 | 382 | 381 | 100% | 77% |
| 21 | 2D | Clinical | DENV1 | 255 | 159 | 159 | 100% | 76% |
| B03 | 2D | Clinical | DENV1 | 609 | 354 | 351 | 99% | 77% |
| B25 | 2D | Clinical | DENV1 | 832 | 563 | 563 | 100% | 79% |
| B28 | 2D | Clinical | DENV3 | 986 | 808 | 806 | 100% | 81% |
The number and percentage of the sequence reads supporting the indicated serotypes are shown in the seventh and eighth columns, respectively, for the indicated clinical samples. The average sequence identification was calculated based on the alignments and is shown in the last column. Shown here are results from the representative samples for DENV1 to DENV4 (a) and random selection (b).