Table 1.

The major regulatory paths to the five modules that were observed in the OsERF71 cascade tree. Nine major regulatory paths that covered more than 10% of genes in the modules were observed in the OsERF71 cascade tree.

No	Gene number	Gene ID	Gene descriptions	Coverage (% of Module)	The most significantGO term	P-value
1	1	Os06g0194000	OsERF71	66 % of Module 1	Translation	2.1e-55
	12	Os12g0597700	Similar to WRKY2
2	1	Os06g0194000	OsERF71	21 % of Module 1	Translation	1.4e-10
	2	Os07g0583700	WRKY transcription factor 78
	3	Os08g0157900	Similar to NAM protein
3	1	Os06g0194000	OsERF71	56 % of Module 5	Photosynthesis	2.6e-21
	2	Os07g0583700	WRKY transcription factor 78
	5	Os03g0854500	Similar to Heat shock transcription factor 31
	6	Os06g0105800	Homeodomain-like containing protein.
4	1	Os06g0194000	OsERF71	23 % of Module 537 % of Module 3	Citrate transport	3.9e-04
	2	Os07g0583700	WRKY transcription factor 78
	5	Os03g0854500	Similar to Heat shock transcription factor 31
	8	Os03g0680800	Similar to cDNA clone: J013124I05
5	1	Os06g0194000	OsERF71	46 % of Module 2	Translation	7.9e-10
	16	Os06g0152200	Zinc-finger protein R2931
	17	Os11g0544700	Repressor protein.
6	1	Os06g0194000	OsERF71	35 % of Module 2	Translation	2.4e-100
	12	Os12g0597700	Similar to WRKY2
	13	Os03g0318600	Similar to Transcription factor HBP-1b
	15	Os10g0561400	Similar to Transcription factor MYBS3.
7	1	Os06g0194000	OsERF71	51 % of Module 327 % of Module 4	Response to oxidative stress	1.9e-12
	2	Os07g0583700t	WRKY transcription factor 78
	9	Os03g0795900	Similar to Heat shock transcription factor 31
	10	Os06g0140400	Similar to HAHB-6
8	1	Os06g0194000	OsERF71	19 % of Module 4	Lipid metabolic process	2.3e-05
	2	Os07g0583700	WRKY transcription factor 78
	9	Os03g0795900	Similar to Heat shock transcription factor 31
	11	Os01g0211800	Similar to VirE2-interacting protein VIP1.
9	1	Os06g0194000	OsERF71	14 % of Module 4	DNA replication	2.3e-06
	12	Os12g0597700	Similar to WRKY2
	13	Os03g0318600	Similar to Transcription factor HBP-1b
	14	Os04g0676700	Similar to H0101F08.8 protein

Gene numbers in the second column indicate the numbers given in Figure 6. The gene IDs of TFs in the paths are shown in the third column, where bold text indicates that the genes belong to Module 1. The most enriched GO term and its p-value for the downstream genes in each regulatory path are described in right-most column.