Table 2.
Differentially expressed genes
| ENSEMBL_ID | Symbol | RNAseq | t | P value | adj P value | Proteomics | |||
|---|---|---|---|---|---|---|---|---|---|
| log FC (TU/NO) | abs ClogFC (TU/NO) | ||||||||
| log FC (TU/NO) | P value | adj P value | |||||||
| ENSG00000138798 | EGF | −6.09 | 6.09 | —16.69 | 6.10E‐16 | 9.96E‐14 | |||
| ENSG00000123610 | TNFAIP6 | 5.91 | 5.91 | 16.86 | 4.72E‐16 | 8.02E‐14 | |||
| ENSG00000171004 | HS6ST2 | −5.61 | 5.61 | —12.87 | 3.53E‐13 | 1.06E‐11 | |||
| ENSG00000135374 | ELF5 | −5.54 | 5.54 | —11.52 | 4.77E‐12 | 8.54E‐11 | |||
| ENSG00000159263 | SIM2 | −5.29 | 5.29 | —10.55 | 3.45E‐11 | 4.44E‐10 | |||
| ENSG00000198910 | L1CAM | −4.34 | 4.34 | —13.61 | 9.37E‐14 | 3.85E‐12 | !0.43 | 8.18E!03 | 2.77E!02 |
| ENSG00000136943 | CTSL2 | −3.94 | 3.94 | —11.14 | 1.02E‐11 | 1.59E‐10 | |||
| ENSG00000137648 | TMPRSS4 | −3.60 | 3.60 | −6.34 | 7.96E‐07 | 2.90E‐06 | |||
| ENSG00000107485 | GATA3 | −3.59 | 3.59 | —18.14 | 7.30E‐17 | 1.87E‐14 | |||
| ENSG00000198780 | FAM169A | −3.45 | 3.45 | —12.67 | 5.17E‐13 | 1.43E‐11 | |||
| ENSG00000146674 | IGFBP3 | 3.38 | 3.38 | 19.75 | 8.31E‐18 | 4.18E‐15 | 3.26 | 1.23E‐03 | 6.70E‐03 |
| ENSG00000113083 | LOX | 3.35 | 3.35 | 11.59 | 4.09E‐12 | 7.52E‐11 | |||
| ENSG00000104413 | ESRP1 | −2.99 | 2.99 | −6.16 | 1.28E‐06 | 4.48E‐06 | |||
| ENSG00000106541 | AGR2 | −2.97 | 2.97 | −3.76 | 8.03E‐04 | 1.60E‐03 | |||
| ENSG00000184937 | WT1 | −2.97 | 2.97 | −8.16 | 7.88E‐09 | 4.72E‐08 | |||
| ENSG00000113578 | FGF1 | −2.95 | 2.95 | −9.64 | 2.51E‐10 | 2.33E‐09 | |||
| ENSG00000118526 | TCF21 | −2.85 | 2.85 | −9.10 | 8.57E‐10 | 6.83E‐09 | |||
| ENSG00000101144 | BMP7 | −2.75 | 2.75 | −3.87 | 6.05E‐04 | 1.24E‐03 | |||
| ENSG00000112715 | VEGFA | 2.72 | 2.72 | 14.91 | 1.01E‐14 | 7.68E‐13 | |||
| ENSG00000038427 | VCAN | 2.72 | 2.72 | 7.92 | 1.41E‐08 | 7.97E‐08 | 3.01 | 3.90E‐05 | 6.15E‐04 |
Top 20 differentially expressed EMT genes (sorted by decreasing absolute log2fold change in mRNA abundance) and available proteomics results.