Table 1. EM data collection and refinement statistics.
ecCTPS filament (EMD-8504, PDB 5U3C) | hCTPS1 filament (EMD- 8474 PDB 5U03) | ecCTPS tetramer (EMD- 8475 PDB 5U05) | ecCTPS-CC (products)(EMD-8513, PDB 5U6R | ecCTPS-CC (substrates)(EMD-8491) | ecCTPS-CC (apo)(EMD-8490) | hCTPS1-H355A tetramer (EMD- 8476) | |
---|---|---|---|---|---|---|---|
Data collection | |||||||
Microscope | Polara | TF20 | TF20 | TF20 | TF20 | TF20 | Spirit |
Voltage (kV) | 300 | 200 | 200 | 200 | 200 | 200 | 120 |
Detector | K2 summit | K2 summit | K2 summit | K2 summit | K2 summit | K2 summit | Ultrascan CCD |
Electron exposure (e–/Å2) | 34 | 45 | 68 | 45 | 45 | 45 | 30 |
Pixel size (Å) | 1.22 | 1.26 | 1.26 | 1.26 | 1.26 | 1.26 | 2.07 |
Reconstruction | |||||||
Point group symmetry | D2 | D2 | D2 | D2 | D2 | D2 | D2 |
Refined helical symmetry | 48.5°, 81.6 Å | 60.6°, 104.1 | 48.2°, 82.1Å | 50.6°, 83.5Å | 48.2°, 82.3 Å | ||
Particles | 8622 | 24880 | 6407 | 31170 | 7135 | 13715 | 4413 |
Resolution (0.143 fsc) (Å) | 4.6 | 6.1 | 7.9 | 5.7 | 8.6 | 7.6 | 17 |
Refinement | |||||||
Initial model used (PDB code) | 2AD5 | 2VO1, 2VKT | 2AD5 | 2AD5 | |||
Model composition | |||||||
Protein residues | 534 | 559 | 534 | 534 | |||
Ligands | CTP, ADP, Mg | UTP, ATP, Mg | CTP, ADP, Mg | ||||
Validation | |||||||
Clashscore | 2 | 4 | 14 | 2 | |||
Poor rotamers (%) | 0.1 | 0.2 | 0.1 | 0.1 | |||
Ramachandran plot | |||||||
Favored (%) | 94 | 96 | 94 | 94 | |||
Allowed (%) | 4 | 4 | 4 | 4 | |||
Outliers (%) | 1 | 1 | 1 | 1 |