Table 2.
Known and novel haplotypes and their prevalence in the four different pig populations.
| Known haplotypes | |||||
|---|---|---|---|---|---|
| Hp- | SLA-1 | SLA-3 | SLA-2 | Found in other breeds, reviewed by Ho et al. (26) | Population and prevalence (this study) |
| 1a.0 | 0101 | 0101 | 0101 | Large White | Danish (31%), Belgian (10%, NGS#2 only) |
| 2.0 | 0201(a), 0701(b) | null | 0201 | NIH, Sinclair, Hanford | Belgian (17%), Danish (8%) |
| 4b.0 | 0401 | 0401 | 040201 | Yucatan | Danish (54%) |
| 6.0 | 0805 | 0601 | 0504 | Yucatan, Microminipig | Kenyan (33%) |
| 7.0 | 0801 | 070101 | 0502 | Yucatan | Belgian (13.8%), Danish (8%) |
| 17.0 | 0804 | 0305 | 0603 | Clawn, Microminipig | Göttingen (37%) |
| 28.0 | 0901(a), 1501(b) | 070102 | 0503 | Landrace | Belgian (10%) |
| 32.0 | 0702 | 0402 | 0202 | CMAH/Gal KO | Danish (15%) |
| 62.0 | 1401 | 04hb06 | 0602 | Landrace | Belgian (14%), Danish (8%) |
|
New suggested haplotypes based on this study | |||||
| Hp- | SLA-1 | SLA-3 | SLA-2 | – | Population and prevalence (this study) |
| A.0 | gz12/1401 | 0502 | 1003 | – | Belgian (28%) |
| B.0 | gz03/08ms05/0803 | 0601 | 1201/12Lw01 | – | Belgian (14%), Danish (38%) |
| C.0 | NS#5 | 070102 | US#11 | – | Danish (15%) |
| D.0 | 0402 | 0503 | 0801 | – | Belgian (17.2%) |
| E.0 | 08sk11 | 0502 | 10sk21 | – | Belgian (10%) |
| F.0 | 1501/1502 | 04hb06 | NS#16 | – | Kenyan (89%) |
| G.0 | rh03 | 0601 | 05rh03 | – | Kenyan (22%) |
| H.0 | HB01 | 0502 | HB04 | – | Kenyan (22%) |
| I.0 | 0201 | – | 110201 | – | Belgian (7%) |
| J.0 | NS#20 | 04hb06 | NS#10 | – | Belgian (7%) |
| K.0 | 0702/0701 | – | 0202 | – | Belgian (7%) |
| L.0 | SLA-1*0806 | 0503/0504 | 0403 | – | Danish (23%) |
| M.0 | 1201, 1301 | 0502 | NS#7 | – | Belgian (28%) |
| X.0 | an02 | 0304 | an04 | – | Göttingen (73%) |
| Z.0 | NS#3 | 0301 | 0301 | – | Göttingen (42%) |
The allele composition of each haplotype is depicted and previously described findings in other breeds included.