Table 3.
Novel SLA class I sequences.
| Novel sequence # | GenBank accession # | Size (nt) | Exon 2 | Exon 3 | Closest match | Similarity with closest match (nt) | # and population of pigs expressing the NS | IPD MHC SLA designation |
|---|---|---|---|---|---|---|---|---|
| NS#1 | KT350995 | 474 | Partial (nt 1–171) | Complete (nt 172–447) | SLA-1*bm04 | 466/474 | 3 (1 Kenyan + 2 Belgian) | – |
| NS#2 | KT350996 | 605 | Complete (nt 33–302) | Complete (303–578) | SLA-2*0604 | 579/605 | 2 (Belgian) | SLA-2*06:14 |
| NS#3 | KT350997 | 606 | Complete (nt 33–302) | Complete (303–578) | SLA-1*sk13 | 579/606 | 8 (Göttingen minipigs) | SLA-1*22:01 |
| NS#4 | KT350998 | 473 | Partial (nt 1–171) | Complete (nt 172–447) | SLA-1*st11 | 459/473 | 2 (Belgian) | – |
| NS#5 | KT350999 | 282 | Partial (nt. 1–171) | Partial (nt 172–282) | SLA-1*0802 | 279/282 | 2 (Danish) | – |
| NS#6 | KT351000 | 426 | Complete (nt 33–302) | Partial (nt 303–426) | SLA-2*0901/0902 | 421/426 | 2 (Belgian) | – |
| NS#7 | KT351001 | 605 | Complete (nt 33–302) | Complete (nt 303–578) | SLA-2*1001 | 604/605 | 9 (Belgian) | SLA-2*10:08 |
| NS#9 | KT351002 | 605 | Complete (nt 34–303) | Complete (nt 304–579) | SLA-3*0503 | 604/605 | 2 (Belgian) | SLA-3*05:03:03 |
| NS#10 | KT351003 | 605 | Complete (nt 33–302) | Complete (nt 303–578) | SLA-2*0601 | 584/605 | 2 (Belgian) | SLA-2*06:15 |
| NS#11 | KT351004 | 282 | Partial (nt 1–171) | Partial (nt 172–282) | SLA-2*06me01 | 274/282 | 2 (Danish) | – |
| NS#16 | KT351008 | 282 | Partial (nt 1–171) | Partial (nt 172–282) | SLA-2*06bm03 | 273/282 | 8 (Kenyan) | – |
| NS#20 | KT351012 | 473 | Partial (nt 1–171) | Complete (nt 172–447) | SLA-1*1601 | 461/473 | 1 (Belgian) | – |
Table presenting the length of the sequences as well as the part of exon 2 and 3, which were sequenced. Displayed is also the closest matching SLA class I allele and similarity with it. Furthermore, the number of pigs, the population from which each novel sequence was detected along with the ISAG allele designation is listed.
–, not designated due to insufficient sequence data.