TABLE 1.
Gene | Forward primer sequence (5′ to 3′) | Reverse primer sequence (5′ to 3′) | Expected product size (bp) | Reference or Genbank accession no. |
---|---|---|---|---|
blaPSE1 | TTTGGTTCCGCGCTATCTG | TACTCCGAGCACCAAATCCG | 150 | 7 |
blaTEM | GCACGAGTGGGTTACATCGA | GGTCCTCCGATCGTTGTCAG | 310 | 7 |
blaCMY-2 | ATGATGAAAAAATCGTTATGC | TTGCAGCTTTTCAAGAATGCGC | 1143 | 37 |
aphA1-Iab | AAACGTCTTGCTCGAGGC | CAAACCGTTATTCATTCGTGA | 500 | 12 |
aadA | GTGGATGGCGGCCTGAAGCC | AATGCCCAGTCGGCAGCG | 528 | 19 |
aadA2 | CGGTGACCATCGAAATTTCG | CTATAGCGCGGAGCGTCTCGC | 250 | AF071555 |
strA | CCTGGTGATAACGGCAATTC | CCAATCGCAGATAGAAGGC | 548 | 19 |
tetA(A) | GCTACATCCTGCTTGCCTTC | CATAGATCGCCGTGAAGAGG | 210 | X61367 |
tetA(B) | TTGGTTAGGGGCAAGTTTTG | GTAATGGGCCAATAACACCG | 659 | 18 |
tetA(G) | GCTCGGTGGTATCTCTGC | AGCAACAGAATCGGGAAC | 464 | S52437 |
sulI | CTTCGATGAGAGCCGGCGGC | GCAAGGCGGAAACCCGCGCC | 435 | 31 |
Class 1 integron | GGCATCCAAGCACAAGC | AAGCAGACTTGACTGAT | Variablea | 18 |
qacE | ATCGCAATAGTTGGCGAAGT | CAAGCTTTTGCCCATGAAGC | 210 | 31 |
The amplicon size of class 1 integron may be variable, depending on the sizes and the numbers of the gene inserts. However, if no resistance gene cassette is inserted, the expected size is 153 bp.