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. 2005 Feb;49(2):503–511. doi: 10.1128/AAC.49.2.503-511.2005

TABLE 1.

Oligonucleotides used as primers for PCR amplification

Gene Forward primer sequence (5′ to 3′) Reverse primer sequence (5′ to 3′) Expected product size (bp) Reference or Genbank accession no.
blaPSE1 TTTGGTTCCGCGCTATCTG TACTCCGAGCACCAAATCCG 150 7
blaTEM GCACGAGTGGGTTACATCGA GGTCCTCCGATCGTTGTCAG 310 7
blaCMY-2 ATGATGAAAAAATCGTTATGC TTGCAGCTTTTCAAGAATGCGC 1143 37
aphA1-Iab AAACGTCTTGCTCGAGGC CAAACCGTTATTCATTCGTGA 500 12
aadA GTGGATGGCGGCCTGAAGCC AATGCCCAGTCGGCAGCG 528 19
aadA2 CGGTGACCATCGAAATTTCG CTATAGCGCGGAGCGTCTCGC 250 AF071555
strA CCTGGTGATAACGGCAATTC CCAATCGCAGATAGAAGGC 548 19
tetA(A) GCTACATCCTGCTTGCCTTC CATAGATCGCCGTGAAGAGG 210 X61367
tetA(B) TTGGTTAGGGGCAAGTTTTG GTAATGGGCCAATAACACCG 659 18
tetA(G) GCTCGGTGGTATCTCTGC AGCAACAGAATCGGGAAC 464 S52437
sulI CTTCGATGAGAGCCGGCGGC GCAAGGCGGAAACCCGCGCC 435 31
Class 1 integron GGCATCCAAGCACAAGC AAGCAGACTTGACTGAT Variablea 18
qacE ATCGCAATAGTTGGCGAAGT CAAGCTTTTGCCCATGAAGC 210 31
a

The amplicon size of class 1 integron may be variable, depending on the sizes and the numbers of the gene inserts. However, if no resistance gene cassette is inserted, the expected size is 153 bp.