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. 2017 Nov 14;6:748. Originally published 2017 May 26. [Version 2] doi: 10.12688/f1000research.11622.2

Figure 9. t-SNE plot based on the arcsinh-transformed expression of the 10 lineage markers in the cells from the PBMC dataset.

Figure 9.

t-SNE was run with no PCA step, perplexity equal to 30 and 1000 iterations. From each of the 16 samples, 2000 cells were randomly selected. Cells are colored according to the expression level of the CD4 marker.