Table 1. Summary of filtering of RNASeq reads.

Sample	Replicate	SOLID ID	Processedreads	Mapped reads
SPO3H	1	SPO_3H0	22,593,851	12,862,079 (56.93%)
	2	SPO_3H1	44,195,718	16,449,088 (37.22%)
	3	SPO_3H2	39,039,144	14,601,483 (37.40%)
SPO12H	1	SPO12_12H0	21,124,149	12,570,187 (59.51%)
	2	SPO12_2H1	40,505,621	14,860,486 (36.69%)
	3	SPO12_12H2	36,698,989	13,448,911 (36.65%)
SPE3H	1	SPE_3H0	23,249,600	13,588,324 (58.45%)
	2	SPE_3H1	45,458,544	17,539,615 (38.58%)
	3	SPE_3H2	43,185,497	16,955,168 (39.26%)
SPE12H	1	SPE12_12H0	23,509,190	13,667,938 (58.14%)
	2	SPE12_2H1	40,341,711	16,303,097 (40.41%
	3	SPE12_12H2	44,680,174	17,471,587 (39.10%)
			Mean	15,026,496.9(44.86%)

SPO3H—schistosomula cultured for 3 hours in portal serum; SPO12H—schistosomula cultured for 12 hours in portal serum; SPE3H—schistosomula cultured for 3 hours in peripheral serum; SPE12H—schistosomula cultured for 12 hours in peripheral serum;