Table 3. The downloaded data used in our integrative approach for piRNAs identificatiton across species.
Species/Dataset | positive | negative | chip-seq data | transposons | reference genome assembly | |||
---|---|---|---|---|---|---|---|---|
piRNA | tRNA | miRNA | exonic regions | H3K9me3 | H3K27me3 | |||
Homo sapiens | 32 208 | 449 | 1 747 | 9 113 | 6 346 007 | 8 968 536 | 903 140 | hg38 |
Mus Musculus | 39 986 | 244 | 712 | 4 896 | 2 751 | 1 232 402 | 3 504 253 | mm10 |
Drosophila melanogaster | 18 508 | 93 | 288 | 740 | 508 | 2 322 | 803 255 | dm6 |