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Sequence features of Ty1-copia and Ty3-gypsy retrotransposon families across the eight AA-genome Oryza species. Total sequence of Ty1-copia (A) and Ty3-gypsy (B) elements in the SAT genome, annotated using RepeatMasker. LTR reads depth proxy for copy number for various Ty1-copia (C) and Ty3-gypsy (D) families. LTR, long terminal repeat; SAT, O. sativa ssp. japonica. cv. Nipponbare (Release 7).
