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. Author manuscript; available in PMC: 2017 Jun 19.
Published in final edited form as: J Med Chem. 2015 Jun 16;58(12):4927–4939. doi: 10.1021/acs.jmedchem.5b00613

Table 4.

Binding affinities of reference compounds 1–3 and new compounds 18 to BET proteins and representative bromodomain proteins in other 7 sub-families using Bio-layer Interferometry method.

KD (nM)
1 2 3 18
BRD2(BD1) 14.7±1.9 159±11 54.8±7.8 48.1±4.0
BRD2(BD2) 6.2±1.8 45.4±1.0 70.3±7.3 29.6±6.9
BRD3 (BD1) 13.6±1.0 60.7±10.3 29.8±7.3 17.7±3.6
BRD3 (BD2) 11.7±1.5 40.7±8.5 40.5±7.2 16.3±4.1
BRD4 (BD1) 12.8±2.9 99.4±5.8 52.8±9.2 47.0±14.8
BRD4 (BD2) 6.7±0.7 47.6±2.7 215±29 44.6±22.1
CREBBP > 10000 3084 670
ATAD2A > 10000 > 10000 > 10000
ATAD2B > 10000
TRIM24 ~ 10000
BAZ2B > 10000
MLL1 9500
TAF1B2 > 10000
BRG1 > 10000
PB1BR5 > 10000