Table 2.
Summary of transcriptome data generated from adventitious roots of Panax ginseng cultivars CS, SH, and SU (CS, Cheongsun; SH, Sunhyang; and SU, Sunun).
| Adventitious root sample (SRA accession number) | Raw data |
QC filtered data |
||
|---|---|---|---|---|
| Total no. of reads | Length (bp) | Total no. of reads | Length (bp) | |
| CS, replicate 1a (SRR2132332) | 16,731,664 | 2,321,621,040 | 15,291,398 | 2,115,447,628 |
| CS, replicate 2a (SRR1688723) | 14,306,820 | 1,977,938,763 | 12,831,592 | 1,766,225,247 |
| CS, replicate 3a (SRR2132333) | 14,801,822 | 2,056,937,756 | 13,407,302 | 1,857,154,376 |
| SH, replicate 1a (SRR1688724) | 17,526,160 | 2,446,652,196 | 15,710,392 | 2,185,318,113 |
| SH, replicate 2a (SRR2132380) | 16,947,000 | 2,354,285,233 | 15,409,700 | 2,134,138,490 |
| SH, replicate 3a (SRR2132382) | 16,426,236 | 2,281,803,413 | 14,810,282 | 2,050,279,385 |
| SU, replicate 1 (SRR2134236) | 15,542,974 | 2,155,072,375 | 14,066,330 | 1,943,820,582 |
| SU, replicate 2 (SRR2134277) | 15,770,684 | 2,187,522,302 | 14,314,738 | 1,979,136,578 |
| SU, replicate 3 (SRR2134367) | 15,461,854 | 2,160,894,730 | 13,846,510 | 1,928,707,399 |
| Total | 186,981,726 | 22,553,682,825 | 172,796,402 | 20,550,270,711 |
aTranscriptomes of CS and SH were obtained from a previous report (Lee Y.S. et al., 2016).