Table 2.
The Top 20 Transcript Clusters Significant at a 1% False Discovery Rate Ordered by Fold Change
| Gene Name | Avg Expr | t Statistic | P Value | B-H–Adjusted P Value | Absolute Fold Change |
|---|---|---|---|---|---|
| ORM1 | 5.56 | 6.68 | 2.79 × 10−9 | 3.61 × 10−6 | 3.62 |
| DEFA4 | 6.62 | 3.69 | 0.0004 | 0.0051 | 3.04 |
| CD177 | 5.66 | 4.63 | 1.39 × 10−5 | 0.0006 | 2.52 |
| ARG1 | 5.09 | 4.02 | 0.0001 | 0.0027 | 2.29 |
| SLPI | 7.69 | 5.56 | 3.41 × 10−7 | 7.05 × 10−5 | 2.29 |
| MMP9 | 7.75 | 4.79 | 7.42 × 10−6 | 0.0004 | 2.28 |
| RNASE3 | 6.49 | 4.17 | 7.61 × 10−5 | 0.0019 | 2.26 |
| TXN | 7.80 | 8.80 | 1.96 × 10−13 | 2.75 × 10−9 | 2.22 |
| BCL2A1 | 6.50 | 6.03 | 4.58 × 10−8 | 2.01 × 10−5 | 2.19 |
| TNFAIP6 | 6.85 | 4.93 | 4.37 × 10−6 | 0.0003 | 2.15 |
| SNORD64 | 4.68 | −4.86 | 5.57 × 10−6 | 0.0003 | −2.11 |
| ANXA3 | 7.23 | 5.38 | 7.12 × 10−7 | 0.0001 | 2.11 |
| CAMP | 7.24 | 4.78 | 7.82 × 10−6 | 0.0004 | 2.11 |
| CSTA | 8.41 | 8.48 | 8.27 × 10−13 | 5.81 × 10−9 | 2.06 |
| HP | 5.51 | 4.11 | 9.29 × 10−5 | 0.0021 | 2.05 |
| CLEC4D | 5.87 | 5.18 | 1.58 × 10−6 | 0.0001 | 2.02 |
| SUB1 | 7.32 | 5.37 | 7.23 × 10−7 | 0.0001 | 2.01 |
| OLFM4 | 4.80 | 2.88 | 0.005 | 0.0301 | 2.00 |
| PGLYRP1 | 7.64 | 5.72 | 1.71 × 10−7 | 4.54 × 10−5 | 1.99 |
| RPL26 | 8.92 | 5.64 | 2.42 × 10−7 | 5.66 × 10−5 | 1.97 |
Definition of abbreviations: Avg Expr = average log2-adjusted expression level for that gene across all the arrays; B-H = Benjamini-Hochberg.
The highest fold change in complete set of differentially expressed genes (n = 1,358) was 3.62.