Table 4.
Candidate genes less than 100 Kb to rust resistance markers for designated rust genes in the ABC, NLR and START families
| Designated rust gene | Chromosome | Marker | Ensembl genea | Familyb | Distancec |
|---|---|---|---|---|---|
| SrND643 | 4AL | gwm350 | 4AL_7AFBA6334 | NLR (CNL) | 293 |
| Lr37/Sr38/Yr17 | 2AS | Ventriup-LN2 | 2AS_71B82606A | START (START) | 503 |
| Sr26 | 6AL | BE518379 | 6AL_91A76CBCC | ABC (I) | 561 |
| Lr34/Yr18/Bdv1/Pm38/Ltn1 | 7DS | cssfr1 | 7DS_25B02BA46d | ABC (Gpdr) | 1212 |
| Lr34/Yr18/Bdv1/Pm38/Ltn1 | 7DS | cssfr2 | 7DS_25B02BA46d | ABC (Gpdr) | 2189 |
| Sr33 | 1DS | Xcfd15 | 1DS_9EABB4B7A | NLR (CNL) | 9523 |
| Lr46/Yr29/Pm39/Ltn | 1BL | Xwmc719 | 1BL_33D479058 | NLR (CNL) | 28,712 |
| Sr13 | 6AL | CD926040 | 6AL_22F03E292 | NLR (CNL) | 29,257 |
| SrND643 | 4AL | wmc219 | 4AL_7E627E983 | NLR (CNL) | 99,528 |
aThe ‘Traes_’ prefix in each gene identifier removed
bAbbreviations: ABC, ATP-binding cassette; NLR, nucleotide-binding site /leucine-rich repeat (NB-LRR or NBS-LRR); START, steroidogenic acute regulatory (StAR) protein-related lipid transfer domain. The subgroup names were added in the parentheses. CNL: coiled-coil NBS-LRR; Gpdr: pleiotrpoic drug resitance class in G subfamily
cPhysical distance in the number of bases between the gene start (5′ transcription start site or TSS) and marker end (marker located upstream of a gene) or the gene end (3′ transcription termination site or TTS) and marker start (marker located downstream of a gene)
dTraes_7DS_25B02BA46 represents the cloned Lr34 gene (cf. Figure 2)