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. Author manuscript; available in PMC: 2018 Jan 1.
Published in final edited form as: J Comput Aided Mol Des. 2016 Sep 30;31(1):29–44. doi: 10.1007/s10822-016-9956-6

Table 3.

Experimental and computed binding free energies with and without salt effects for methyl octa-acid hosts and thermodynamic decompositions of binding free energies calculated with inclusion of salt effects

Guests Structure
ΔGexp
a
Without salt effects With salt effects
ΔGcalc
b
ΔGcalcDH
c
ΔEbd
ΔGreorg
e
ΔEreorgf
-TΔSconf
g
G1 graphic file with name nihms864064t1.jpg −5.3 −7.5 ± 0.06 −4.8 ± 0.08 −17.2 ± 0.01 12.4 ± 0.08 0.8 ± 1.4 11.5 ± 1.4
G2 graphic file with name nihms864064t2.jpg −5.1 −10.6 ± 0.07 −7.7 ± 0.09 −17.6 ± 0.01 9.9 ± 0.1 1.4 ± 1.7 8.5 ± 1.6
G3 graphic file with name nihms864064t3.jpg −6 −16.2 ± 0.07 −9.4 ± 0.1 −21.4 ± 0.01 12 ± 0.1 0.7 ± 1.7 11.3 ± 1.7
G4 graphic file with name nihms864064t4.jpg −2.4 −2.4 ± 0.1 −0.7 ± 0.2 −21.1 ± 0.02 20.4 ± 0.2 6.7 ± 2.7 13.7 ± 2.7
G5 graphic file with name nihms864064t5.jpg −3.9 −14.5 ± 0.07 −5.7 ± 0.1 −16.5 ± 0.02 10.8 ± 0.1 1.2 ± 1.8 9.6 ± 1.8
G6 graphic file with name nihms864064t6.jpg −4.5 −8.9 ± 0.06 −5.8 ± 0.09 −18.0 ± 0.02 12.2 ± 0.1 1.4 ± 1.6 10.8 ± 1.6
RMSE 6.7 2.1
Correlation coefficient (r) 0.66 0.89

All values in kcal/mol.

a

Experimental ITC binding free energy, except for G4 and G5 for which only NMR measurements are available [35].

b

Predicted binding free energy without addition of ionic effects.

c

Binding free energy prediction with the addition of salt effects.

d

Average interaction energy of the bound complex at =1. The uncertainty is estimated as the standard error of the mean.

e

Reorganization free energy as calculated using Eq. 9,

f

Reorganization energy or intra-molecular strain as calculated using Eq. 10,

g

Binding entropy computed by finite difference method and evaluated at 300K; the uncertainty is computed by error propagation for all the decompositions