Table 3.
Differentially expressed genes (DEGs, P < 0.05, FDR < 0.1) up-regulated after hatching 8 h, 24 h or 48 h exposure to potato root diffusate common to G. rostochiensis de novo and reference transcriptomes.
| Contig de novo Contig reference | Blast results | DEG fold change | Up-regulated treatments |
|---|---|---|---|
| comp140896_c0 | Protein nep-1 | 6.7 | 8 h |
| G11130.T1 | 3.6, 3.0, 3.2 | 8 h, 24 h, 48 h | |
| comp79822_c0 | pectate lyase 2 | 8.5, 11.6 | 24 h, 48 h |
| G3826.T1 | 9.6, 6.4 | 24 h, 48 h | |
| comp223900_c0 | fatty acid elongation protein 3 | 7.6, 9.1 | 24 h, 48 h |
| G9188.T1 | 6.1, 3.0 | 24 h, 48 h | |
| comp233971_c0 | transport and golgi organization-like | 7.6, 7.3 | 24 h, 48 h |
| G4478.T1 | 5.7, 3.2 | 24 h, 48 h | |
| comp197008_c0 | extracellular solute-binding protein family 1 | 7.0, 6.7 | 24 h, 48 h |
| G5298.T1 | 5.5, 3.5 | 24 h, 48 h | |
| comp239365_c0 | cre-mig-17 protein | 6.6, 7.6 | 24 h, 48 h |
| G6254.T1 | 4.4 | 48 h | |
| comp250236_c1 | acid phosphatase-1 | 5.7, 9.4 | 24 h, 48 h |
| G3528.T1 | 8.1, 2.5 | 24 h, 48 h | |
| comp252640_c1 | arabinogalactan endo- -beta-galactosidase | 5.7, 8.1 | 24 h, 48 h |
| G7269.T1 | 6.4, 3.5 | 24 h, 48 h | |
| comp241201_c2 | histidine acid phosphatase family | 5.3, 5.6 | 24 h, 48 h |
| G8616.T1 | 4.9, 3.8 | 24 h, 48 h | |
| comp146670_c0 | pectate lyase 1 | 5.0, 6.8 | 24 h, 48 h |
| G7095.T1 | 6.7, 4.4 | 24 h, 48 h | |
| comp258474_c0 | protein cht-2 | 4.9, 5.3 | 24 h, 48 h |
| G11848.T1 | 8.1, 4.3 | 24 h, 48 h | |
| comp253737_c1 | sodium bicarbonate transporter-like protein 11 | 4.7, 6.2 | 24 h, 48 h |
| G10850.T1 | 4.7, 2.8 | 24 h, 48 h | |
| comp205597_c0 | alpha-carbonic anhydrase | 4.7, 6.2 | 24 h, 48 h |
| G4741.T1 | 7.0, 3.6 | 24 h, 48 h | |
| comp249939_c0 | expansin partial | 4.0, 5.9 | 24 h, 48 h |
| G9520.T1 | 5.9, 3.8 | 24 h, 48 h | |
| comp82167_c0 | phosphoglycerate mutase | 3.8, 8.0 | 24 h, 48 h |
| G4316.T1 | 6.5, 7.3 | 24 h, 48 h | |
| comp242049_c0 | glutamine synthetase | 3.4, 3.7 | 24 h, 48 h |
| G3175.T1 | 1.9 | 48 h | |
| comp212021_c0 | peptidase c13 family protein | 8.0 | 48 h |
| G6661.T1 | 5.6 | 48 h | |
| comp254346_c0 | lysosomal protective | 8.0 | 48 h |
| G926.T1 | 3.4 | ||
| comp256008_c0 | protein mlt-7 | 7.6 | 48 h |
| G307.T1 | 3.2 | 48 h | |
| comp257944_c0 | tartrate-resistant acid phosphatase type 5-like | 6.6 | 48 h |
| G13014.T1 | 6.0 | 48 h | |
| comp231807_c0 | c52 protein | 5.9 | 48 h |
| G5991.T1 | 8.2 | 48 h | |
| comp250073_c0 | hypothetical protein Aave_2802 | 5.5 | 48 h |
| G9300.T1 | 5.6 | 48 h | |
| comp184777_c0 | protein fat- isoform a | 5.1 | 48 h |
| G5119.T1 | 3.5 | 48 h | |
| comp252939_c0 | protein del- isoform a | 4.5 | 48 h |
| G11187.T1 | 3.1 | 48 h | |
| comp242752_c0 | beta-endoglucanase | 4.4 | 48 h |
| G7081.T1 | 6.7, 5.7 | 24 h, 48 h | |
| comp258555_c1 | ghf5 endo-beta-glucanase precursor | 4.3 | 48 h |
| G6471.T1 | 4.6 | 48 h | |
| comp220907_c0 | hypothetical protein LOAG_17131 | 7.8 | 8 h |
| G12000.T1 | 2.2 | 48 h | |
| comp171900_c0 | hydroxyacyl-coenzyme a mitochondrial precursor | 4.1 | 48 h |
| G7218.T1 | 2.6 | 48 h | |
| comp219369_c0 | beta- levanase invertase | 3.9 | 48 h |
| G10382.T1 | 3.7 | 48 h | |
| comp234017_c0 | transmembrane amino acid transporter | 3.9 | 48 h |
| G1410.T1 | 1.7 | 48 h | |
| comp208748_c0 | cathepsin z precursor | 3.8 | 48 h |
| G8230.T1 | 3.7, 2.2 | 24 h, 48 h | |
| comp249497_c3 | rbp-1 protein | 3.8 | 48 h |
| G11341.T1 | 6.4, 4.4 | 24 h, 48 h | |
| comp235317_c0 | protein ugt-49 | 3.7 | 48 h |
| G7585.T1 | 2.2 | 48 h | |
| comp250308_c0 | n-acetylated-alpha-linked acidic dipeptidase | 3.7 | 48 h |
| G6374.T1 | 3.2 | 48 h | |
| comp204787_c0 | Protein C36E8.1 | 3.5 | 48 h |
| G10574.T1 | 1.4 | 48 h | |
| comp248143_c0 | protein nep- isoform a | 3.2 | 48 h |
| G5673.T1 | 13.1, 7.7 | 24 h, 48 h |