Table 2.
Candidate genes proposed to mediate salinity tolerance in quinoa.
| Gene ID | Annotation | Type of CNV | DE root | DE shoot | TMD |
|---|---|---|---|---|---|
| AUR62006689 | WAKL8 Wall-associated receptor kinase-like 8 (A.th.) | Loss in 8 comparisons (Kurmi and Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca) | −1.79 | – | 2 |
| AUR62029668 | Protein of unknown function | Loss in 8 comparisons (G-205 and Ames 22157 vs. Regalona, Ollague, Real and Chucapaca) | Inf | – | 2 |
| AUR62039756 | At1g21890 WAT1-related protein At1g21890 | Loss in 4 comparisons (Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca) | −2.31 | – | 9 |
| AUR62021463 | At1g67300 Probable plastidic glucose transporter 2 | Gain in 6 comparisons (Kurmi, G-205 and Cherry Vanilla vs. Regalona and Chucapaca), loss in 2 comparisons (Ames 22157 vs. Ollague and Real) | – | 1.04 | 10 |
| AUR62007451 | CYP75B1 Flavonoid 3'-monooxygenase (A.th.) | Gain in 4 comparisons (Kurmi, G-205, Ames 22157 and Cherry Vanilla vs. Regalona) | – | 0.63 | 2 |
| AUR62039871 | psbD Photosystem II D2 protein (Lobularia maritima) | Gain in 4 comparisons (Cherry Vanilla vs. Regalona, Ollague and Real) and (Ames 22157 vs. Regalona) | – | 0.97 | 5 |
| AUR62043781 | CER1: Protein ECERIFERUM 1 (A.th.) | Gain in 6 comparisons (Kurmi and G-205 vs. Ollague and Regalona), (Kurmi vs. Real), (Ames 22157 vs. Ollague) | – | −0.90 | 6 |
| AUR62043583 | Unknown function | SNP that is correlated with reduced salinity tolerance of C. berlandieri relative to C. hircinum and quinoa | Inf | – | 4 |
| AUR62034957 | AAP6 Amino acid permease 6 (A.th.) | Loss in 6 comparisons (Kurmi vs. Real), Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca), (Ames 22157 vs. Ollague), gain in 2 comparisons (G-205 vs. Regalona and Chucapaca) | – | 0.81 | 2 |
| AUR62011984 | SULTR1;1 Sulfate transporter 1.1 (A.th.) | Loss in 4 comparisons (Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca) | – | 1.44 | 2 |
| AUR62021522 | SULTR3;4 Probable sulfate transporter 3.4 (A.th.) | Loss in 6 comparisons (Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca), (Ames 22157 vs. Ollague and Real), gain in 2 comparisons (G-205 vs. Regalona and Chucapaca) | – | 0.80 | 9 |
| AUR62016440 | SULTR3;4 Probable sulfate transporter 3.4 (A.th.) | Loss in 4 comparisons (Cherry Vanilla and Ames 22157 vs. Ollague and Real) | 2.63 | – | 10 |
| AUR62004478 | CNGC7 Putative cyclic nucleotide-gated ion channel 7 (A.th.) | Loss in 4 comparisons (Cherry Vanilla vs. Regalona, Ollague, Real and Chucapaca) | −1.37 | −0.77 | 2 |
| AUR62002768 | DTX14 Protein DETOXIFICATION 14 (A.th.) | Gain in 4 comparisons (Kurmi, G-205, Ames 22157 and Cherry Vanilla vs. Real) | – | 0.91 | 5 |
| AUR62041961 | TMK1 Receptor protein kinase 1 (A.th.) | Gain in 4 comparisons (Kurmi, G-205, Ames 22157 and Cherry Vanilla vs. Chucapaca) | – | −2.37 | 6 |
DE, differential expression (log2); TMD, transmembrane domains; inf, infinite increase (no reads for control condition); A.th., Arabidopsis thaliana.