. 2017 Jun 21;8:1055. doi: 10.3389/fpls.2017.01055

Table 1.

Summary of single-nucleotide polymorphisms in Pto-MIR475b and the four target genes.

Gene	Region	Length (bp)	No. of polymorphic sites	No. of common SNPs	Percentage of polymorphisms (%)	Nucleotide diversity
						π	𝜃w
Pto-MIR475b
	pre-miR475b	135	1	1	0.74	0.00137	0.00137
	pri-miR475b	2135	19	19	0.90	0.00208	0.00208
Pto-PPR1
	Synonymous	402.04	11	11	2.72	0.00869	0.00643
	Non-synonymous	1388.96	15	15	1.08	0.00371	0.00254
	Total silent^a	4405.04	142	142	3.22	0.01157	0.00758
	Total^b	5794	157	157	2.71	0.0097	0.00645
Pto-PPR2
	Synonymous	271.03	11	10	4.06	0.015	0.00954
	Non-synonymous	937.98	28	21	3.00	0.01139	0.00702
	Total silent^a	5191.02	128	113	2.47	0.00912	0.0058
	Total^b	6130	156	144	2.54	0.00946	0.00598
Pto-PPR3
	Synonymous	310.83	2	2	0.64	0.0021	0.00151
	Non-synonymous	1123.17	1	1	0.09	0.00013	0.00021
	Total silent^a	6004.83	68	67	1.13	0.00309	0.00266
	Total^b	7128	69	68	0.97	0.00262	0.00228
Pto-PPR4
	Synonymous	259.5	0	0	0	0	0
	Non-synonymous	892.5	0	0	0	0	0
	Total silent^a	7952.5	141	133	1.77	0.00599	0.00417
	Total^b	8845	141	133	1.59	0.00538	0.00375

^aTotal silent: synonymous sites plus polymorphic sites in non-coding regions of genes.