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. 2017 Jun 16;83(13):e00472-17. doi: 10.1128/AEM.00472-17

TABLE 3.

Comparison between morphological identification of fungi and NGS resultsa

Taxonomic level: class Morphological type A1
B1
C1
Morphology
NGS (% DNA sequences) Morphology
NGS (% DNA sequences) Morphology
NGS (% DNA sequences)
No. of fungal particles/m3/wk % fungal particles No. of fungal particles/m3/wk % fungal particles No. of fungal particles/m3/wk % fungal particles
Dothideomycetes Davidiella = Cladosporium (C. herbarum + C. cladosporoides) 696 26.83 35.00 2,464 46.02 35.00 3,581 55.13 45.00
Polythrincium (= Mycosphaerella) 2 0.08 0.02 3 0.06 0.00 7 0.11 0.00
Epicoccum 12 0.46 2.00 6 0.11 5.00 19 0.29 2.00
Alternaria 34 1.31 12.00 30 0.56 8.00 27 0.42 7.00
Drechslerab 18 0.69 0.50 9 0.17 0.20 23 0.35 0.40
Curvularia 0 0.00 0.08 0 0.00 0.10 2 0.03 0.01
Tetraploa 0 0.00 0.00 0 0.00 0.00 2 0.03 0.00
Spegazzinia 0 0.00 0.00 24 0.45 0.06 6 0.09 0.01
Sordariomycetes Chaetomium 18 0.69 1.00 18 0.34 0.70 19 0.29 0.70
Fusarium 0 0.00 0.06 30 0.56 0.30 0 0.00 0.20
Xylariales 12 0.46 0.20 15 0.28 0.20 2 0.03 0.20
Arthrinium 18 0.69 0.10 18 0.34 0.01 40 0.62 0.06
Khuskia 18 0.69 0.01 39 0.73 0.03 25 0.38 0.01
(Ascomycota) Incertae sedis Beltrania 0 0.00 0.00 0 0.00 0.00 2 0.03 0.01
Agaricomycetes Psathyrellaceae 30 1.16 0.50 57 1.06 0.50 56 0.86 0.90
Bovista 14 0.54 0.80 9 0.17 0.50 66 1.02 0.60
Ganoderma 4 0.15 0.03 15 0.28 0.06 21 0.32 0.05
Boletales 6 0.23 0.30 0 0.00 0.20 6 0.09 0.30
Thelephoraceae 10 0.39 0.09 9 0.17 0.07 22 0.34 0.20
Pucciniomycetes Pucciniomycetes 4 0.15 0.40 9 0.17 0.80 7 0.11 0.30
Ustilaginomycetes Ustilaginomycetes 14 0.54 1.00 39 0.73 0.30 73 1.12 0.50
Subtotal 910 35.08 54.09 2,794 52.19 52.03 4,006 61.67 58.45
Others 1,684 64.92 45.91 2,560 47.81 47.97 2,490 38.33 41.55
Total 2,594 100.00 100.00 5,354 100.00 100.00 6,496 100.00 100.00
a

Morphological spore types with no representatives in either of the two analyses have been omitted.

b

Data from the teleomorphs Pyrenophora, Cochliobolus, and Bipolaris and the anamorph Helminthosporium are also included.