Table 1.

Summary of the Data Set in which the Density Maps Are Simulated

Dataa Set ID	Source Model					Target Model					Sequenceg Identity (%)
	Protein Nameb	PDB IDc	Residued ID	Lengthe (Amino Acids)	Helix Residuesf Percentge	Protein Name	PDB ID	Residue ID	Length (Amino Acids)	Helix Residues Percentage
1	Adenylate kinase	4AKE [A]	1–214	214	0.459	Adenylate kinase	1AKE [A]	1–214	214	0.593	100.00
2	Triacylglycerol acylhydrolase	3TGL [A]	5–269	265	0.4	Triacylglycerol acylhydrolase	4TGL [A]	5–269	264	0.381	98.86
3	Maltodextrin binding protein	1OMP [A]	1–369	369	0.513	Maltodextrin binding protein	1ANF [A]	1–369	369	0.459	100.00
4	Aspartate aminotransferase	9AAT [A]	3–410	401	0.476	Aspartate aminotransferase	1AMA [A]	3–410	401	0.506	100.00
5	GroEL	1OEL [A]	2–525	524	0.534	60 kDa chaperonin	2C7C [A]	2–525	524	0.595	99.23
6	Lactoferrin	1LFG [A]	1–691	691	0.421	Lactoferrin	1LFH [A]	1–691	691	0.421	99.69

^aThe data we use in each test.

^bProtein name.

^cProtein PDB ID and chain ID.

^dThe amino acid residues we use to evaluate RMSDs.

^eThe number of amino acid residues in the sequence.

^fThe percentage of helix residues.

^gThe sequence identity between the source model and target model.