Table 6.

Ramachandran Outliers and Clash Score of the Source Models

Data Set	Ramachandran Outliers					Clash Score
	Sourcea Model (%)	Flex-EMb Fitted Model (%)	MDFF Fittedc Model (%)	Helix-and-Skeletond-Guided Fitted Model (%)	Targete Model (%)	Source Model	Flex-EM Fitted Model	MDFF Fitted Model	Helix-and-Skeleton-Guided Fitted Model	Target Model	Refined Fittedf Model
Ribosome maturation protein SBDS	1.20	2.40	0.80	2.40	2.40	0.48	55	9.93	229	1.21	8.5
Magnesium transport protein CorA	0.00	4.30	0.00	0.90	0.00	7.75	119.8	10.2	239	0	69.4
26s protease regulatory subunit 6b homolog	1.70	2.00	0.60	2.50	3.40	81.18	218.24	12.5	274	69.29	39.5
Chaperonin	1.00	1.00	0.00	0.60	1.00	3.7	108.22	8.03	67.7	1.79	59.6
60 kDa chaperonin	0.60	2.70	0.00	1.50	0.80	0.13	287.27	11.9	128	0	43.9
DNA polymerase III subunit α	3.80	4.20	1.30	3.00	2.70	26.27	100.67	12.2	180	21.43	72.9

^aThe final fitted (helix-and-skeleton guided fitting) models.

^bFlex-EM fitted models.

^cMDFF fitted models.

^dTarget models.

^eColumn.

^fShows the clash scores of Phenix-refined models.