TABLE 1.
PCR primers used in ChIP analysis
| Locus | Label on graphsa | Gene | Primer | Upstream primer sequence | Reference | Useb |
|---|---|---|---|---|---|---|
| CAD | CAD | CAD | Upstream | CACCTTTTCCCCCGTTTT | 51 | SQ and RTM |
| Downstream | CAAGCCAGAGCCCTAAGC | |||||
| β-globin | β-globin | β-Globin gene | Upstream | GCCTTGCCTGTTCCTGCTC | 11 | SQ and RTM |
| Downstream | CAGACCATAAACTGTATTTTTCTTATTGAGCCC | |||||
| Globin hs3 | Globin hs3 | Upstream | TGTTTCCCTGATGAGGATTCAATGG | 18 | SQ | |
| Downstream | CCCACACATGGTCATCTATCTGAGC | |||||
| Myc | Myc | Myc (N site) | Upstream | AAGGAAGCATCTTCCCAGAAC | RTM | |
| Downstream | AAGTGTGCCCTCTACTGGCCA | |||||
| IgH | Eμ | Eμ | Upstream | GGAATGGGAGTGAGGCTCTCTC | 10 | SQ |
| Downstream | GCTGCAGGTGTTCCGGTTCTGATCGGCC | |||||
| Eμ | Eμ | Upstream | TGGCAGGAAGCAGGTCAT | 51 | RTM | |
| Downstream | GGACTTTCGGTTTGGTGG | |||||
| 0.2 | 0.2 | Upstream | GCCCTATATTGGTAACTGAACCGTG | SQ and RTM | ||
| Downstream | GCTATGATCAAAACCAGTCATCGG | |||||
| 1.6 | hs3A | Upstream | GGGTAGGGCAGGGATGCTCACAT | 22 | SQ and RTM | |
| Downstream | GCTCTGGTTTGGGGCACCTGTGC | |||||
| 11.9 | hs1,2 | Upstream | CACACAGCTGCCGAGTTACTCA | SQ | ||
| Downstream | CATCCTTGCCCATCTCCTGTCA | |||||
| 12.0 | hs1,2 | Upstream | AGCATAGGCCACTGGGACTGG | RTM | ||
| Downstream | CTCTCACTTCCCTGGGGTGTT | |||||
| 14 | 14 | Upstream | CTTACAGCCCCACATGGCTATAGC | SQ and RTM | ||
| Downstream | CTGACAGAGACAGACAGCGTTCC | |||||
| 24.5 | hs3B | Upstream | TGGTTTGGGGCACCTGTGCTGAG | 22 | SQ and RTM | |
| Downstream | GGGTAGGGCAGGGATGTTCACAT | |||||
| 27.7 | hs4 | Upstream | CCATGGGACTGAAACTCAGGGAACCAGAAC | SQ and RTM | ||
| Downstream | CTCTGTGACTCGTCCTTAGG | |||||
| 30.9 | hs5 or 31 | Upstream | GCTTGCCTTCTGGGCTAGAAC | SQ and RTM | ||
| Downstream | AGCAGCCAGTGCTCTTAACCC | |||||
| 32.1 | hs6 or 32 | Upstream | GTTGAGTCTGAAGATACACGCG | SQ and RTM | ||
| Downstream | TCGCAGCTATTCCCAACTACG | |||||
| 34.3 | hs7 or 34 | Upstream | AATACGTTCCTAGGGCCTAACGATACT | SQ and RTM | ||
| Downstream | TGGAGACGCCACAGGTGTATC | |||||
| 35.1 | 35 | Upstream | AATACGTTCCTAGGGCCTAACGATACT | SQ and RTM | ||
| Downstream | ATGCCCTTCCCCATCGTAACT | |||||
| 38.1 | 38 | Upstream | CCTGTGGACACATGGTTACGC | SQ and RTM | ||
| Downstream | GTTGGCAAGAGGACTCACTACGTC | |||||
| 48.5 | 48 | Upstream | GGTGGGAAGGAGTGGAGCTAC | SQ and RTM | ||
| Downstream | AATGTGGAGATGCGAGATTGCCC |