Table 1. Whole genome constellation of characterised human and animal rotavirus strains circulating in Uganda, 2012–2014.
| Species | Strain Nomenclature | VP7 | VP4 | VP6 | VP1 | VP2 | VP3 | NSP1 | NSP2 | NSP3 | NSP4 | NSP5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | RVA/Human-wt/UGA/KTV-13-023/2012/G12P[6] | G12 | P[6] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-13-183/2013/G12P[6] | G12 | P[6] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/NSA-13-043/2013/G9P[8] | G9 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-13-163/2013/G9P[8] | G9 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-12-147/2012/G9P[8] | G9 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-12-093/2012/G9P[8] | G9 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-13-285/2013/G9P[8] | G9 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-13-157/2013/G1P[8] | G1 | P[8] | I1 | R1 | C2 | M1 | A1 | N1 | T1 | E1 | H1 |
| Human | RVA/Human-wt/UGA/MUL-12-104/2012/G3P[6] | G3 | P[6] | 12 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-308/2013/G8P[6] | G8 | P[6] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-166/2013/G3P[6] | G3 | P[6] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-171/2013/G3P[6]** | G3/G3 | P[6]/P[6] | I2 | R2/R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-204/2013/G8P[6] | G8 | P[6] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-496/2013/G8P[4] | G8 | P[4] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-12-117/2012/G3P[6] | G3 | P[6] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-160/2013/G8P[4] | G8 | P[4] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MSK-13-048/2013/G9P[8] | G9 | P[8] | I2 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Human | RVA/Human-wt/UGA/MUL-13-427/2013/G8P[4] | G8 | P[4] | 12 | R2 | C2 | M2 | A2 | N2 | T2 | E2 | H2 |
| Goat | RVA/Goat-wt/UGA/BUW-14-A085/2014/G6P[1] | G6 | P[1] | I2 | R2 | C2 | M2 | A11 | N2 | T6 | E2 | H3 |
| Cattle | RVA/Cow-wt/UGA/BUW-14-A035/2014/G12P[8] | G12 | P[8] | I1 | R1 | C1 | M1 | A1 | N1 | T1 | E1 | H1 |
| Pig | RVA/Pig-wt/UGA/BUW-14-A008/2014/G12P[8] | G12 | P[8] | I1 | R1 | C1 | M1 | A8 | N1 | T1 | E1 | H1 |
| Pig | RVA/Pig-wt/UGA/BUW-14-A003/2014/G3P[13] | G3 | P[13] | I1 | R1 | C1 | M1 | A8 | N1 | T7 | E1 | H1 |
| Pig | RVA/Pig-wt/UGA/KYE-14-A047/2014/G3P[13] | G3 | P[13] | I1 | R1 | C1 | M1 | A8 | N1 | T1 | E1 | H1 |
| Pig | RVA/Pig-wt/UGA/KYE-14-A048/2014/G3P[13] | G3 | P[13] | I1 | R1 | C1 | M1 | A8 | N1 | T1 | E1 | H1 |
** Sample contained mixed sequences of the same genotype in VP1, VP4 and VP7 genes
Colours represent the genome constellation: Green(Wa-like), Red(DS-1 like), White(non 1, non 2 genotype)
VP: viral structural protein, NSP: Viral non structural protein