Table 2.

Transcription factors, which show significantly better (>5% AUC) binding site predictability using (a) DynaSeq than DNAshape features and (b) vice versa of (a).

S. No.	TF ID	TF Name	AUC gain (%)	S. No.	TF ID	TF Name	AUC gain (%)
(a)
1	MA03841	SNT2	10.0	47	MA01931	Lag1	5.8
2	CN00091	LM9	9.7	48	PB00051	Bbx1	5.7
3	PB00801	Tbp1	9.4	49	PB01791	Sp1002	5.7
4	MA03511	DOT6	9.3	50	MA02591	HIF1AARNT	5.6
5	PL00131	hlh2hlh15	8.6	51	MA02671	ACE2	5.6
6	PH00341	Gbx2	8.6	52	CN00841	LM84	5.6
7	CN00441	LM44	8.2	53	MA03501	TOD6	5.6
8	PH01681	Hnf1b	8.2	54	PB01261	Gata52	5.6
9	PH01641	Six4	8.0	55	PF00101	GCCATNTTG	5.6
10	MA04001	SUT2	7.7	56	PB01321	Hbp12	5.6
11	PB01651	Sox112	7.7	57	PF00561	GGGTGGRR	5.6
12	MA03351	MET4	7.5	58	MA02371	pan	5.5
13	MA01382	REST	7.4	59	MA01421	Pou5f1	5.5
14	MA01551	INSM1	7.3	60	POL0121	TATABox	5.5
15	MA02251	ftz	7.1	61	PB01111	Bhlhb22	5.5
16	MA00831	SRF	7.1	62	MA02321	lbl	5.5
17	CN00271	LM27	7.0	63	MA00411	Foxd3	5.5
18	MA01431	Sox2	7.0	64	PB01631	Six62	5.4
19	PH01071	Msx2	7.0	65	MA04071	THI2	5.4
20	MA00071	Ar	7.0	66	PF01401	RNGTGGGC	5.4
21	PB01981	Zfp1282	6.9	67	PB01751	Sox42	5.4
22	MA03861	TBP	6.9	68	CN02111	LM211	5.4
23	PH01171	Nkx31	6.8	69	CN00521	LM52	5.4
24	PF00231	TAATTA	6.7	70	PB01001	Zfp7401	5.4
25	PL00041	hlh27	6.7	71	MA02861	CST6	5.4
26	PB01571	Rara2	6.7	72	MA01851	Deaf1	5.3
27	PH01701	Tgif2	6.6	73	MA02701	AFT2	5.3
28	PH01161	Nkx29	6.5	74	PF00761	CAGGTA	5.3
29	PL00181	hlh25	6.4	75	MA03141	HAP3	5.3
30	MA01031	ZEB1	6.4	76	PH01731	Uncx	5.2
31	PH01481	Pou3f3	6.3	77	PF00121	CAGGTG	5.2
32	MA00661	PPARG	6.2	78	CN01571	LM157	5.2
33	CN02301	LM230	6.2	79	PF01421	ACAWYAAAG	5.2
34	MA00181	CREB1	6.2	80	MF00031	RELclass	5.2
35	PF01131	AACYN NNNTTCCS	6.2	81	PH00981	Lhx8	5.2
36	MA00601	NFYA	6.1	82	PF00131	CTTTGT	5.2
37	PB01491	Myb2	6.1	83	PH00971	Lhx62	5.2
38	PH01221	Obox2	6.0	84	PB01501	Mybl12	5.2
39	PH01621	Six2	6.0	85	PH01091	Nkx11	5.2
40	CN00821	LM82	6.0	86	PB00081	E2F21	5.2
41	MA01591	RXRRARDR5	6.0	87	CN00591	LM59	5.1
42	PH00701	Hoxc5	5.9	88	MA02581	ESR2	5.1
43	CN01191	LM119	5.9	89	CN02101	LM210	5.1
44	MA04111	UPC2	5.9	90	MA01101	ATHB5	5.0
45	MA00861	sna	5.8	91	MA00792	SP1	5.0
46	PF01631	GGAR NTKYCCA	5.8
(b)
S. No.	TF ID	TF Name	AUC gain (%)
1	MF00071	bHLHzipclass	8.0
2	MA02771	AZF1	7.0
3	PH00011	Alx3	7.0
4	MA01951	Lim3	6.5
5	PB01861	Tcf32	6.2
6	PF01191	GGGNRMNNYCAT	5.7
7	MA01891	E5	5.6
8	PH00111	Alx12	5.5
9	CN00361	LM36	5.4
10	MA01621	Egr1	5.3
11	MA00131	brZ4	5.3
12	PB01851	Tcf12	5.2