Table 3.

Precision (prec) and sensitivity (sens) as a function of the proportion of differentially selected sites (f) in condition 2, under model M1 and M2

Threshold	M1						M2
	f = 0.5		f = 0.1		f = 0.05		f = 0.5		f = 0.1		f = 0.05
	Prec	Sens	Prec	Sens	Prec	Sens	Prec	Sens	Prec	Sens	Prec	Sens
>0.50	26.7	53.5	4.7	47.0	2.8	56.4	2.5	49.7	5.3	53.0	25.5	51.1
>0.55	39.1	9.0	7.7	7.6	4.7	9.3	4.0	8.4	8.3	8.4	37.5	8.5
>0.60	47.0	6.1	10.0	4.9	6.3	6.0	5.6	5.4	10.9	5.3	45.2	5.2
>0.65	55.2	4.3	14.1	3.5	9.0	4.4	8.2	3.8	14.3	3.4	52.8	3.4
>0.70	67.0	2.9	21.9	2.4	15.8	3.2	12.1	2.1	21.3	1.8	63.8	1.9
>0.75	78.7	2.0	34.4	1.8	25.7	2.5	23.3	1.4	33.0	1.1	78.2	1.1
>0.80	84.1	1.5	50.8	1.4	35.2	1.8	33.0	0.7	44.8	0.6	86.5	0.7
>0.85	91.2	1.1	66.2	1.0	49.0	1.2	41.4	0.3	73.7	0.3	92.7	0.3
>0.90	93.5	0.8	81.7	0.7	68.3	0.6	33.3	0.1	90.9	0.1	100	0.1
>0.95	96.0	0.4	93.3	0.3	86.7	0.3	0.0	0.0	100	0.01	100	0.03