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Components of HIV-1 transmission cluster definitions based on phylogenetic node support.
| Phylogenetic tree reconstruction (examples of commonly used methods) |
| Neighbour-joining |
| Maximum-likelihood |
| Bayesian |
| Substitution model (examples of commonly used substitution models) |
| Jukes–Cantor (JC) |
| Tamura–Nei (TN) |
| General time reversible (GTR) |
| Node support tests (examples of commonly used tests) |
| Bootstrap test |
| Approximate likelihood-ratio test (aLRT) |
| Zero-branch length test |
