Table 4. DNA repair gene haplotypes associated with gastric cancer risk.
Gene | SNPs | Haplotype | Frequency HC | Frequency GC | OR (95% CI)a | P-value |
---|---|---|---|---|---|---|
BRIP1 | rs2048718 | CAC | 0.3730 | 0.4043 | Reference | |
rs4968451 | CAT | 0.2021 | 0.1852 | 0.85 (0.65–1.1) | 0.2203 | |
rs4986764 | TAC | 0.1622 | 0.1609 | 0.91 (0.69–1.20) | 0.5112 | |
TCT | 0.1117 | 0.0888 | 0.73 (0.53–0.99) | 0.0459 | ||
TCC | 0.0621 | 0.0712 | 1.07 (0.71–1.62) | 0.7384 | ||
ERCC4 | rs1799801 | TGCC | 0.5944 | 0.6408 | Reference | |
rs1800067 | CGGT | 0.1857 | 0.1666 | 0.83 (0.66–1.03) | 0.0927 | |
rs2238463 | CAGT | 0.1167 | 0.1134 | 0.89 (0.69–1.16) | 0.3962 | |
rs3136038 | TGGT | 0.0790 | 0.0599 | 0.70 (0.50–0.96) | 0.0291 | |
ERCC5 | rs1047768 | CC | 0.5330 | 0.5460 | Reference | |
rs17655 | TG | 0.2335 | 0.1908 | 0.80 (0.66–0.98) | 0.0350 | |
TC | 0.1908 | 0.2155 | 1.11 (0.89–1.37) | 0.3500 | ||
TP53 | rs1042522 | GCG | 0.4331 | 0.4417 | Reference | |
rs1614984 | GTG | 0.2490 | 0.2939 | 1.13 (0.92–1.38) | 0.2367 | |
rs9894946 | CTG | 0.1347 | 0.1180 | 0.88 (0.67–1.14) | 0.3292 | |
CCA | 0.1222 | 0.0847 | 0.68 (0.51–0.91) | 0.0081 |
HC, healthy control; GC, gastric cancer; OR, odds ratio; CI, confidence interval.
Haplotypes with frequencies > 0.05 are shown in the table.
aOdds ratios and 95% confidence intervals were calculated according to the additive genetic model taking as a reference the more common haplotype.
P-values < 0.05 are highlighted in bold.