Table 1.
Numbers of CFKs in different species and subfamilies.
| Species | Archaeplastida Lineage | A1 | A2 | B1 | B2 | B3 | B4 | B5 | B6 | C1 | C2 | C3 | D1 | D2 | D3 | Total | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37034 Glaucophyta nucleotide & EST sequences | Glaucophyta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Cyanophora paradoxa | Glaucophyta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | stage I |
| Cyanoptyche gloeocystis | Glaucophyta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Gloeochaete wittrockiana | Glaucophyta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Cyanidioschyzon merolae | Rhydophyta/Cyanidiophyceae | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| *Calliarthron tuberculosum | Rhydophyta/Rhodophyceae | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| Porphyra yezoensis | Rhydophyta/Rhodophyceae | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| *Porphyridium cruentum | Rhydophyta/Porphyridiophyceae | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | |
| Micromonas pusilla CCMP1545 | Chlorophyta/Prasinophyceae | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | |
| Micromonas pusilla RCC299 | Chlorophyta/Prasinophyceae | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | |
| Ostreococcus lucimarinus | Chlorophyta/Prasinophyceae | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 4 | |
| Ostreococcus tauri | Chlorophyta/Prasinophyceae | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | |
| Bathycoccus prasinos | Chlorophyta/Prasinophyceae | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | |
| Chlorella variabilis NC64A | Chlorophyta/Trebouxiophyceae | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 5 | stage II |
| Volvox carteri | Chlorophyta/Chlorophyceae | 0 | 0 | 0 | 3 | 1 | 2 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 11 | |
| Chlamydomonas reinhardtii | Chlorophyta/Chlorophyceae | 0 | 0 | 0 | 3 | 1 | 5 | 0 | 0 | 3 | 2 | 0 | 0 | 0 | 0 | 14 | |
| Coccomyxa subellipsoidea | Chlorophyta/Chlorophyceae | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 0 | 6 | |
| *Mesostigma viride | Charophyta/Mesostigmatophyceae | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 1 | 0 | 6 | stage III |
| Klebsormidium flaccidum | Charophyta/Klebsormidiophyceae | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 1 | 0 | 2 | 12 | |
| **Nothoceros aenigmaticus | Bryobiotina/Anthocerotophyta (hornwort) | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| **Phaeoceros laevis | Bryobiotina/Anthocerotophyta (hornwort) | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| **Marchantia polymorpha | Bryobiotina/Marchantiophyta(Liverwort) | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 1 | NA | NA | 1 | |
| **Dumortiera hirsuta | Bryobiotina/Marchantiophyta(Liverwort) | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| **Haplomitrium gibbsiae | Bryobiotina/Marchantiophyta(Liverwort) | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| **Pellia epiphylla | Bryobiotina/Marchantiophyta(Liverwort) | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| Physcomitrella patens | Bryobiotina/Bryophyta/(moss)/Bryopsida | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 8 | 7 | 6 | 10 | 33 | |
| Selaginella moellendorffii | Lycopodiophyta | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 18 | 0 | 1 | 5 | 4 | 2 | 2 | 33 | |
| **Ceratopteris richardii | Pteridophyta/Pteridopsida | NA | NA | NA | NA | NA | NA | 1 | NA | NA | NA | NA | NA | NA | NA | 1 | |
| *Anemia tomentosa | Pteridophyta/Polypodiopsida | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 | 2 | 4 | 3 | 18 | |
| *Angiopteris evecta | Pteridophyta/Marattiopsida | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 0 | 0 | 4 | 2 | 2 | 1 | 14 | |
| *Ginkgo biloba | gymnosperm/Ginkgophyta | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 0 | 0 | 5 | 4 | 1 | 3 | 19 | |
| Picea abies | gymnosperm/Pinophyta | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 4 | 1 | 3 | 16 | |
| Amborella trichopoda | Angiospermae/Amborella | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 4 | 5 | 3 | 3 | 19 | |
| Phoenix dactylifera | Angiospermae/monocot/Arecales | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 7 | 6 | 8 | 6 | 31 | |
| Musa acuminata | Angiospermae/monocot/Zingiberales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 0 | 16 | 13 | 13 | 14 | 66 | |
| Oryza sativa japonica | Angiospermae/monocot/Poales | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 0 | 0 | 5 | 8 | 8 | 11 | 37 | |
| Aquilegia coerulea | Angiospermae/Magnoliophyta | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 5 | 4 | 4 | 6 | 23 | |
| Vitis vinifera | Angiospermae/Vitales | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 0 | 0 | 7 | 5 | 5 | 6 | 29 | |
| Arabidopsis lyrata | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 11 | 14 | 8 | 11 | 48 | |
| Arabidopsis thaliana | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 11 | 13 | 8 | 10 | 46 | |
| Brassica rapa | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 | 0 | 0 | 19 | 16 | 16 | 19 | 78 | |
| Capsella rubella | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 14 | 14 | 8 | 10 | 50 | |
| Carica papaya | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 6 | 5 | 5 | 5 | 25 | |
| Thellungiella halophila | Angiospermae/Brassicales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 11 | 11 | 10 | 13 | 49 | |
| Glycine max | Angiospermae/Fabales | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 9 | 0 | 0 | 15 | 17 | 12 | 17 | 72 | |
| Fragaria vesca | Angiospermae/Rosales | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | 5 | 5 | 4 | 6 | 26 | |
| Cucumis sativus | Angiospermae/Cucurbitales | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 0 | 0 | 8 | 5 | 6 | 6 | 30 | |
| Populus trichocarpa | Angiospermae/Malpighiales | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 10 | 0 | 0 | 11 | 8 | 9 | 11 | 51 | |
| Mimulus guttatus | Angiospermae/Asterids/Lamiales | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 7 | 0 | 0 | 8 | 7 | 9 | 10 | 42 |
“NA” stands for unknown number due to lacking of the genomes/transcriptomes. *Indicates partial genome or RNA-seq sequences available. **Indicates only limited sequences and without transcriptome sequences nor genomes.