Table 8.
Kinase Set | Docking Method | Scoring Function | Structure Type | Mean ROC-AUC | 95% CI | Mean ROC Enrichments | ||||
---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||
0.5% | 1.0% | 2.0% | 5.0% | 10.0% | ||||||
DUD-E | Glide | SVMGen | Crystal | 0.77 | 0.72 – 0.82 | 27.8 | 20.2 | 13.8 | 7.9 | 5.0 |
High | 0.72 | 0.67 – 0.77 | 20.6 | 15.2 | 10.6 | 6.3 | 4.1 | |||
Low | 0.70 | 0.65 – 0.75 | 19.2 | 13.7 | 9.6 | 5.5 | 3.7 | |||
| ||||||||||
GlideScore | Crystal | 0.67 | 0.64 – 0.70 | 16.5 | 11.4 | 8.0 | 4.8 | 3.3 | ||
High | 0.62 | 0.59 – 0.65 | 15.3 | 10.4 | 7.0 | 4.1 | 2.9 | |||
Low | 0.60 | 0.57 – 0.63 | 14.0 | 8.8 | 5.5 | 3.6 | 2.4 | |||
| ||||||||||
Vina | SVMGen | Crystal | 0.77 | 0.72 – 0.82 | 27.6 | 20.3 | 13.8 | 7.8 | 5.0 | |
High | 0.72 | 0.67 – 0.77 | 21.4 | 15.3 | 10.8 | 6.3 | 4.1 | |||
Low | 0.70 | 0.64 – 0.76 | 18.5 | 13.2 | 9.6 | 5.7 | 3.7 | |||
| ||||||||||
GlideScore | Crystal | 0.73 | 0.70 – 0.76 | 28.6 | 17.4 | 11.2 | 6.1 | 4.0 | ||
High | 0.65 | 0.61 – 0.69 | 11.5 | 8.2 | 5.8 | 3.8 | 2.7 | |||
Low | 0.62 | 0.65 – 0.68 | 4.0 | 3.2 | 2.6 | 2.2 | 2.0 | |||
| ||||||||||
SARfari | Glide | SVMGen | High | 0.68 | 0.61 – 0.75 | 17.0 | 10.8 | 7.7 | 4.7 | 3.4 |
Low | 0.63 | 0.58 – 0.68 | 10.1 | 7.4 | 6.1 | 3.8 | 2.7 | |||
| ||||||||||
GlideScore | High | 0.70 | 0.65 – 0.75 | 20.9 | 15.5 | 9.5 | 5.4 | 3.6 | ||
Low | 0.63 | 0.60 – 0.66 | 8.3 | 5.9 | 4.7 | 2.8 | 2.3 | |||
| ||||||||||
Vina | SVMGen | High | 0.75 | 0.69 – 0.81 | 17.0 | 13.9 | 8.8 | 6.2 | 4.3 | |
Low | 0.72 | 0.68 – 0.76 | 10.8 | 9.5 | 7.6 | 5.2 | 3.5 | |||
| ||||||||||
GlideScore | High | 0.61 | 0.55 – 0.67 | 10.2 | 7.3 | 5.3 | 3.5 | 2.5 | ||
Low | 0.59 | 0.55 – 0.63 | 7.6 | 5.7 | 3.8 | 2.5 | 2.0 |