Antibodies |
|
mouse anti-Ki67 Alexa Fluor 488 (Clone B56) |
BD Biosciences |
Cat# 558616; RRID: AB_647087
|
mouse anti-PD-1 PE (Clone EH12.2H7) |
BioLegend |
Cat# 329905; RRID: AB_940481
|
mouse anti-Bcl6 PE-CF594 (Clone K112-91) |
BD Biosciences |
Cat# 562401; RRID: AB_11152084
|
mouse anti-ICOS PerCP-cy5.5 (Clone C398.4A) |
BioLegend |
Cat# 313517; RRID: AB_10639735
|
mouse anti-CXCR5 PE-Cy7 (Clone MU5UBEE) |
Thermo Fisher Scientific |
Cat# 25-9185-42; RRID: AB_2573540
|
mouse anti-FoxP3 V450 (Clone 259D/C7) |
BD Biosciences |
Cat# 561182; RRID: AB_10564088
|
mouse anti-CD4 BV650 (Clone L200) |
BD Biosciences |
Cat# 563737 |
mouse anti-CD8 BV786 (Clone RPA-T8) |
BD Biosciences |
Cat# 563823 |
mouse anti-CXCR3 BUV395 (Clone 1C6/CXCR3) |
BD Biosciences |
Cat# 565223 |
mouse anti-CD20 BUV737 (Clone 2H7) |
BD Biosciences |
Cat# 564432 |
mouse anti-CD95 APC (Clone DX2) |
BD Biosciences |
Cat# 561978; RRID: AB_10895117
|
mouse anti-CD3 Alexa Fluor 700 (Clone SP34.2) |
BD Biosciences |
Cat# 557705; RRID: AB_396814
|
mouse anti-CD27 APC-e780 (Clone O323) |
Thermo Fisher Scientific |
Cat# 47-0279-42; RRID: AB_1272040
|
Fixable Viability Dye Aqua |
Invitrogen |
Cat# L34966
|
|
Bacterial and Virus Strains |
|
BG505.W6M.ENV.C2 |
Wu et al., 2006 / NIH AIDS Reagent Program |
Cat# 11518 |
MG505.W0M.ENV.A2 |
Wu et al., 2006 / NIH AIDS Reagent Program |
Cat# 11528 |
MG505.W0M.ENV.H3 |
Wu et al., 2006 / NIH AIDS Reagent Program |
Cat# 11529 |
12 virus panel – global isolates |
deCamp et al., 2014 |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
ISCOMATRIX |
CSL Behring |
N/A |
BG505 SOSIP.664 (HEK293T produced) |
Sanders et al., 2013 |
N/A |
BG505 SOSIP.664 (CHO produced) |
Catalent |
N/A |
BG505 SOSIP.v4.1 |
de Taeye et al., 2015 |
N/A |
BG505 SOSIP.v5.2 |
A.T.d.l.P. et al., unpublished data |
N/A |
BG505 NFL |
Sharma et al., 2015 |
N/A |
BG505 Olio6 |
D.W.K. et al., unpublished data |
N/A |
BG505 Olio6 CD4-KO |
D.W.K. et al., unpublished data |
N/A |
BG505 V3-peptide TRPNNNTRKSIRIGPGQAFYATG |
A&A Labs LLC |
N/A |
BG505 V3-peptide biotin TRPNNNTRKSIRIGPGQAFYATGGAGK-biotin |
GenScript |
N/A |
TAPNNFTVKSIRIGPGAFYYMGGAGK-biotin |
GenScript |
N/A |
His-Tag biotin peptide biotin-ALDGGGGSHHHHHHHH |
A&A Labs LLC |
N/A |
Evans Blue dye |
Sigma Aldrich |
Cat# E2129 |
DMPC: 1,2-dimyristoyl-sn-glycero-3-phosphocholine |
Avanti Polar Lipids |
Cat# 850345 |
DGS-NTA(Ni): 1,2-dioleoyl-sn-glycero-3-[(N-(5-amino-1-carboxypentyl) iminodiacetic acid)succinyl] (nickel salt) |
Avanti Polar Lipids |
Cat# 790404 |
MPB: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-[4-(p-maleimidophenyl)butyramide] (sodium salt) |
Avanti Polar Lipids |
Cat# 870012 |
Cholesterol |
Sigma-Aldrich |
Cat# C8667 |
|
Experimental Models: Cell Lines |
|
TZM-bl cells |
NIH AIDS Reagent Program |
Cat# 8129 |
|
Experimental Models: Organisms/Strains |
|
Indian-origin rhesus macaques (outbred) |
AlphaGenesis Inc |
N/A |
|
Recombinant DNA |
|
pSG3Δenv plasmid |
NIH AIDS Reagent Program |
Cat# 11051 |
|
Software and Algorithms |
|
Prism v7.0 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
FlowJo v9.9.4 |
FlowJo |
https://www.flowjo.com |
|
Other |
|
Mini-osmotic pumps (0.5 μL/hr, 14 day release) |
ALZET |
Model 2002 |