a0 |
Typical cell size |
5 μm |
ra |
Cell radius growth rate (default) |
0.19 μm/s |
rp |
DNA replication rate |
0.44 h-1
|
rbd |
DNA damage rate (background) |
0.01 h-1
|
rcd |
DNA damage rate (copied part in S phase) |
0.015 h-1
|
rbr |
DNA repair rate (background) |
0.3 h-1
|
rn |
DNA repair rate (non-homologous end joining) |
0.1 h-1
|
rh |
DNA repair rate (homologous recombination) |
0.4 h-1
|
ks |
DNA repair suppress constant |
0.1 |
rCDK1 |
CDK1 production rate |
0.48 h-1
|
rCDK1i |
CDK1 inhibition rate |
0.045 h-1
|
rCDK2 |
CDK2 production rate |
0.48 h-1
|
rCDK2i |
CDK2 inhibition rate |
0.075 h-1
|
rWEE1 |
WEE1 production rate |
0.48 h-1
|
rCDK1y |
CDK1y synthesis rate |
2.4 h-1
|
rCDK2E |
MF synthesis rate |
0.48 h-1
|
dCDK1y |
CDK1y degradation rate in G2 phase |
1 h-1
|
ath |
Threshold for a in G1 phase |
0.95×21/2×a0
|
NthCDK2E |
Threshold for MF in G1 phase |
0.99 |
NthCDK1y |
Threshold for CDK1y in G2 phase |
0.1 |
Qth |
Threshold for Q in M phase |
0.02 |
k |
Repulsive spring constant |
5 [k] |
η |
Linear drag coefficient |
1 h·[k] |