TABLE 3.
Clustered spoligotypesa
| SIT | Clade | No. of isolates (% of total) | Spoligotype | Octal |
|---|---|---|---|---|
| 61 | LAM10-CAM | 42 (26.42) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777743760771 |
| 50 | H3 | 16 (10.1) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◻◻◻◻◼◼◼◼◼◼◼ | 777777777720771 |
| 53 | T1 | 6 (3.8) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777777760771 |
| 54 | MANU2 | 6 (3.8) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◼◼◼◼◼◼◼◼◼ | 777777777763771 |
| 370 | T1 | 6 (3.8) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◼◼◼◼◼◼◼◼◻◻◻◻◼◻◻◼◼◼◼ | 777777747760471 |
| 1196 | 6 (3.8) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◼◼◼◼◼◼◼◼ | 777777777761771 | |
| 2697 | MANU2 | 6 (3.8) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◼◼◼◼◼◼◼◻◻◼◼◼◼◼◼◼◼◼ | 777777743763771 |
| 1 | Beijing | 5 (3.1) | ◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◻◼◼◼◼◼◼◼◼◼ | 000000000003771 |
| 42 | LAM9 | 4 (2.5) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777607760771 |
| 523 | MANU_ancestor | 4 (2.5) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼ | 777777777777771 |
| 237 | 3 (1.9) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◻◻◻◻◻◻◻◻◻◻◻ | 777777777700000 | |
| 378 | T1 | 3 (1.9) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◼◻◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777667760771 |
| 2298 | T1 | 3 (1.9) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◻◻◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777647760771 |
| 176 | LAM6 | 2 (1.3) | ◼◼◼◼◼◼◼◼◼◼◼◼◻◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◻◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777737607560771 |
| 373 | T1 | 2 (1.3) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777767760771 |
| 741 | H3 | 2 (1.3) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◼◼◼◼◼◼◻◼◻◻◻◻◼◼◼◼◼◼◼ | 777777757720771 |
| 1580 | T1 | 2 (1.3) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◻◼◼◼◼◼◼◼◼◻◻◻◻◼◼◼◼◼◼◼ | 777777747760771 |
| 1690 | MANU2 | 2 (1.3) | ◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◼◻◼◻◻◼◼◼◼◼◼◼ | 777777777762771 |
a
Of 159 total isolates, 120 (75.5%) belonged to clustered spoligotypes; 22 (13.8%) had unique SITs, and 17 (10.7%) were orphan strains.