TABLE 2.
Long-term carrier category, duration-adjusted TMRCA, and SNV range for outbreaks investigated using WGS
| Outbreak | Long-term carrier category | Duration-adjusted TMRCA (days [95% highest posterior density interval]) | Distance between all isolates in cluster (SNV range) |
|---|---|---|---|
| A | Indirect ward contact | 285 (134–445) | 0–19 |
| B | Indirect ward contact | 515 (394–646) | 0–24 |
| C | Direct ward contact | 103 (61–228) | 0–9 |
| D | Direct ward contact | 78 (21–153) | 0–10 |
| E | Postoutbreak LTC | 96 (40–165) | 0–6 |
| F | Direct ward contact | 86 (36–160) | 0–5 |
| G | Indirect ward contact | 394 (259–539) | 0–46 |
| H | Direct ward contact | 46 (5–95) | 0–4 |
| I | Postoutbreak LTC | 30 (1–69) | 0–5 |
| J | Postoutbreak LTC | 161 (61–271) | 0–9 |
| K | Direct ward contact | 31 (0–82) | 1–4 |
| L | Postoutbreak LTC | 216 (134–314) | 0–8 |
| M | Direct ward contact | 54 (9–107) | 0–4 |
| N | Indirect ward contact | 156 (50–275) | 0–36 |
| O | Preoutbreak LTC | 378 (240–531) | 9–25 |
| P | Preoutbreak LTC | 54 (12–124) | 1–11 |
| Q | Preoutbreak LTC | 204 (108–306) | 1–13 |
| R | Household | 29 (0–73) | 1–2 |
| S | Indirect ward contact | 431 (269–599) | 3–32 |
| T | School | 12 (0–40) | 0–2 |