Table 1.
Carotenoid metabolic genes in grapevine.
| Name | Accession no. | Protein Len | Chrom | Chr srart | Chr end | Mol.wt (kDa) | pI | Aliphatic index | GRAVY | Loca |
|---|---|---|---|---|---|---|---|---|---|---|
| MVA pathway | ||||||||||
| VvAACT1 | VIT_00s0531g00050.t01 | 440 | chrUn | 31408786 | 31413407 | 45958.9 | 8.54 | 99.59 | 0.187 | C |
| VvAACT2 | VIT_12s0057g01200.t01 | 415 | chr12 | 9967097 | 9973038 | 42339.6 | 5.82 | 100.19 | 0.261 | — |
| VvHMGS | VIT_02s0025g04580.t01 | 464 | chr2 | 4131692 | 4138165 | 51004.0 | 5.92 | 76.70 | −0.192 | — |
| VvHMGR1 | VIT_18s0122g00610.t01 | 593 | chr18 | 494573 | 498105 | 63636.3 | 6.83 | 92.45 | 0.072 | M |
| VvHMGR2 | VIT_04s0044g01740.t01 | 561 | chr4 | 23597424 | 23599575 | 59777.0 | 7.86 | 94.39 | 0.175 | — |
| VvHMGR3 | VIT_03s0038g04100.t01 | 575 | chr3 | 2970538 | 2972585 | 61190.6 | 6.07 | 97.36 | 0.160 | — |
| VvMVK | VIT_14s0128g00330.t01 | 388 | chr14 | 2969463 | 2974536 | 41209.6 | 5.96 | 102.81 | 0.259 | S |
| VvpMVK | VIT_02s0012g02530.t01 | 508 | chr2 | 10033966 | 10045076 | 55167.9 | 5.67 | 91.04 | −0.100 | — |
| VvMDC | VIT_13s0106g00790.t01 | 422 | chr13 | 10644213 | 10652294 | 46640.1 | 6.48 | 85.07 | −0.300 | — |
| VvFPS | VIT_19s0015g01010.t01 | 341 | chr19 | 9094526 | 9098457 | 39064.9 | 5.53 | 95.43 | −0.201 | — |
| MEP pathway | ||||||||||
| VvDXS1 | VIT_05s0020g02130.t01 | 716 | chr5 | 3851283 | 3856072 | 77091.0 | 6.36 | 88.04 | −0.078 | C |
| VvDXS2 | VIT_11s0052g01730.t01 | 735 | chr11 | 19555292 | 19558837 | 78975.0 | 7.13 | 86.83 | −0.133 | C |
| VvDXS3 | VIT_04s0008g04970.t01 | 719 | chr4 | 4457279 | 4468718 | 78929.2 | 6.53 | 88.71 | −0.018 | C |
| VvDXS4 | VIT_11s0052g01780.t01 | 690 | chr11 | 19599532 | 19602913 | 74142.5 | 6.32 | 88.10 | −0.119 | C |
| VvDXS5 | VIT_00s0218g00110.t01 | 718 | chrUn | 14030385 | 14035390 | 77179.6 | 7.92 | 88.87 | −0.106 | C |
| VvDXS6 | VIT_11s0052g01240.t01 | 731 | chr11 | 18968097 | 18972989 | 78991.5 | 7.22 | 90.26 | −0.121 | C |
| VvDXR | VIT_17s0000g08390.t01 | 471 | chr17 | 9583558 | 9590206 | 51176.1 | 6.03 | 99.64 | −0.016 | C |
| VvMCT | VIT_12s0035g01950.t01 | 308 | chr12 | 22263637 | 22269775 | 33830.0 | 6.54 | 100.88 | −0.095 | C |
| VvCMK | VIT_06s0009g02320.t01 | 394 | chr6 | 14652972 | 14664719 | 43473.3 | 8.05 | 81.22 | −0.270 | C |
| VvMDS | VIT_02s0025g00380.t01 | 168 | chr2 | 486537 | 487271 | 17970.5 | 6.74 | 91.85 | −0.008 | C |
| VvHDS | VIT_06s0004g02900.t01 | 740 | chr6 | 3629087 | 3636025 | 82345.3 | 5.91 | 90.49 | −0.255 | C |
| VvHDR | VIT_03s0063g02030.t01 | 465 | chr3 | 5305933 | 5311191 | 52522.5 | 5.32 | 80.88 | −0.399 | C |
| VvIDI | VIT_04s0023g00600.t01 | 293 | chr4 | 16802127 | 16809421 | 33557.4 | 6.16 | 87.54 | −0.318 | C |
| Carotenoid biosynthetic pathway | ||||||||||
| VvGGPPS1 | VIT_04s0023g01210.t01 | 368 | chr4 | 17612949 | 17614055 | 39801.9 | 5.91 | 97.80 | −0.049 | C |
| VvGGPPS2 | VIT_18s0001g12 000.t01 | 371 | chr18 | 10227177 | 10228292 | 39683.4 | 5.78 | 92.59 | −0.058 | M |
| VvGGPPS-LS | VIT_05s0020g01240.t01 | 276 | chr5 | 2987258 | 2988130 | 29744.2 | 4.93 | 101.45 | 0.039 | — |
| VvGGPPS-SS | VIT_19s0090g00530.t01 | 298 | chr19 | 6656884 | 6657780 | 32785.3 | 6.19 | 84.87 | −0.307 | C |
| VvPSY1 | VIT_04s0079g00680.t01 | 437 | chr4 | 11495290 | 11499126 | 49643.7 | 8.42 | 82.61 | −0.330 | — |
| VvPSY2 | VIT_12s0028g00960.t01 | 396 | chr12 | 1467727 | 1470354 | 45152.8 | 9.15 | 84.72 | −0.328 | C |
| VvPSY3 | VIT_06s0004g00820.t01 | 357 | chr6 | 935500 | 940685 | 41210.1 | 6.25 | 82.02 | −0.331 | — |
| VvPDS | VIT_09s0002g00100.t01 | 582 | chr9 | 70786 | 92779 | 65495.5 | 6.58 | 92.97 | −0.183 | M |
| VvZ-ISO | VIT_05s0062g01110.t01 | 365 | chr5 | 19770533 | 19774697 | 40610.1 | 8.83 | 101.78 | 0.323 | C |
| VvZDS | VIT_14s0030g01740.t01 | 552 | chr14 | 6600703 | 6613497 | 61181.9 | 7.07 | 87.99 | −0.178 | — |
| VvCRTISO1 | VIT_08s0032g00800.t01 | 641 | chr8 | 4370241 | 4386309 | 70659.6 | 8.50 | 91.83 | −0.054 | — |
| VvCRTISO2 | VIT_12s0035g01080.t01 | 570 | chr12 | 20842885 | 20849118 | 62034.1 | 7.20 | 89.65 | −0.094 | C |
| VvLCYE | VIT_11s0016g01880.t01 | 529 | chr11 | 1519660 | 1526200 | 59261.3 | 6.58 | 89.58 | −0.064 | C |
| VvLCYB | VIT_08s0007g05690.t01 | 508 | chr8 | 19614960 | 19620336 | 57101.1 | 7.20 | 91.32 | −0.094 | — |
| VvCHYB1 | VIT_02s0025g00240.t01 | 299 | chr2 | 360270 | 361917 | 33057.2 | 8.40 | 90.03 | 0.032 | C |
| VvCHYB2 | VIT_16s0050g01090.t01 | 306 | chr16 | 18017218 | 18018829 | 34217.5 | 9.58 | 80.95 | −0.080 | C |
| VvCYP97C | VIT_08s0007g04530.t01 | 546 | chr8 | 18452646 | 18457877 | 61121.1 | 5.78 | 93.90 | −0.107 | C |
| VvCYP97A | VIT_04s0023g00080.t01 | 638 | chr4 | 15934070 | 15957007 | 70813.5 | 6.56 | 92.92 | −0.163 | C |
| VvZEP1 | VIT_07s0031g00620.t01 | 658 | chr7 | 16796162 | 16803660 | 72087.5 | 7.93 | 83.43 | −0.174 | — |
| VvZEP2 | VIT_13s0156g00350.t01 | 475 | chr13 | 24068514 | 24072138 | 53119.2 | 8.74 | 91.52 | −0.150 | — |
| VvZEP3 | VIT_00s0533g00020.t01 | 479 | chrUn | 31461160 | 31463786 | 52399.3 | 8.65 | 94.82 | −0.103 | C |
| VvVDE | VIT_04s0043g01010.t01 | 479 | chr4 | 15682355 | 15687333 | 54596.4 | 6.03 | 77.29 | −0.397 | C |
| VvNXS | VIT_14s0006g02880.t01 | 246 | chr14 | 21063839 | 21068184 | 27562.4 | 9.76 | 92.44 | 0.242 | C |
| VvCCS | VIT_06s0080g00810.t01 | 497 | chr6 | 20814283 | 20815776 | 56254.1 | 8.47 | 86.90 | −0.167 | C |
| Carotenoid catabolism | ||||||||||
| VvCCD1 | VIT_13s0064g00840.t01 | 546 | chr13 | 22673076 | 22681735 | 61634.8 | 6.13 | 81.90 | −0.271 | — |
| VvCCD4a | VIT_02s0087g00910.t01 | 599 | chr2 | 18560792 | 18562591 | 65900.3 | 6.88 | 82.35 | −0.236 | C |
| VvCCD4b | VIT_02s0087g00930.t01 | 589 | chr2 | 18588968 | 18590737 | 65607.2 | 6.63 | 82.41 | −0.187 | C |
| VvCCD8 | VIT_04s0008g03380.t01 | 546 | chr4 | 2785955 | 2788636 | 60526.9 | 6.99 | 79.80 | −0.324 | C |
| VvNCED1 | VIT_19s0093g00550.t01 | 609 | chr19 | 17645484 | 17647313 | 67132.0 | 6.38 | 76.04 | −0.317 | C |
| VvNCED2 | VIT_10s0003g03750.t01 | 605 | chr10 | 6374536 | 6376353 | 67339.1 | 6.36 | 78.00 | −0.365 | C |
| VvNCED6 | VIT_05s0051g00670.t01 | 575 | chr5 | 11589343 | 11591070 | 63137.5 | 8.24 | 87.13 | −0.202 | C |
aThe subcellular location result of grapevine carotenoid metabolic genes by TargetP. ‘C’: Chloroplast; ‘M’: Mitochondrion; ‘S’: Secretory pathway; ‘—’ was any other location without chloroplast, mitochondrion, secretory pathway in cell.