Table 2.
Selection of genes differentially expressed in Pseudo‐nitzschia multistriata cells 6 h after chemical contact of opposite mating types (MTs)
| Pathway/process | GeneModel ID | Gene description | logFC |
|---|---|---|---|
| ABC transporters | PSNMU‐V1.4_AUG‐EV‐PASAV3_0056660.1 | ATP‐binding cassette, subfamily B (MDR/TAP), member 1 | 2.14 |
| Cell cycle and meiosis | PSNMU‐V1.4_AUG‐EV‐PASAV3_0056780.1 | DNA repair protein RAD51 homologue 1, RAD51‐A1a | 7.60 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0104040.1 | DNA repair protein RAD51 homologue 3, RAD51‐Ca | 2.86 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0089060.1 | Pds5a | 1.95 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0102810.1 | Structural maintenance of chromosomes protein 5 | 2.02 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0079810.1 | Structural maintenance of chromosomes protein 3 | 1.67 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0116990.1 | Structural maintenance of chromosomes protein 1 | 2.60 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0072170.1 | Cohesin complex subunit SCC1 (RAD21) | 2.07 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0079350.1 | Cohesin complex subunit SA‐1/2 (SCC3) | 2.49 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0081540.1 | G2/mitotic‐specific cyclin S13‐6 (dsCYC5) | −1.66 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0095090.1 | Cyclin‐B2‐2 (dsCYC4) | −2.14 | |
| Nitrate metabolism | PSNMU‐V1.4_AUG‐EV‐PASAV3_0102470.1 | Ferredoxin‐dependent glutamate synthase 2 | −1.88 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0012680.1 | Ammonium transporter 1, member 5 | −2.01 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0048930.1 | Nitrate/nitrite transporter NarU | −1.88 | |
| Transcription factors | PSNMU‐V1.4_AUG‐EV‐PASAV3_0036500.1 | Transcription factor SKN7 | −2.63 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0061620.1 | Transcriptional activator Myb | −2.31 | |
| Protein processing | PSNMU‐V1.4_AUG‐EV‐PASAV3_0032180.1 | Major intracellular serine protease | −1.96 |
| Receptor like | PSNMU‐V1.4_AUG‐EV‐PASAV3_0028550.1 | Probable leucine‐rich repeat receptor‐like protein kinase At2g33170 | 2.39 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0087210.1 | Probable leucine‐rich repeat receptor‐like protein kinase At1g35710 | −1.84 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0079570.1 | Receptor‐like protein kinase 5 | −1.83 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0113140.1 | Probable leucine‐rich repeat receptor‐like serine/threonine protein kinase At4g08850 | −1.70 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0039440.1 | Receptor‐like protein kinase HSL1 | −1.69 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0029550.1 | Leucine‐rich repeat receptor‐like serine/threonine protein kinase GSO2 | −1.62 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0018920.1 | Somatic embryogenesis receptor kinase 1 | −1.52 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0055410.1 | Probable leucine‐rich repeat receptor‐like serine/threonine protein kinase At4g26540 | −2.32 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0055070.1b | Probable leucine‐rich repeat receptor‐like protein kinase | −2.41 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0055080.1b | |||
| Signalling | PSNMU‐V1.4_AUG‐EV‐PASAV3_0051110.1 | Soluble guanylate cyclase 88E | 6.30 |
| Miscellaneous | PSNMU‐V1.4_AUG‐EV‐PASAV3_0102760.1 | Protein aardvark (adhesion protein) | 6.09 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0112340.1 | Tetratricopeptide (TPR) repeat‐containing proteinc (protein–protein interactions) | 2.94 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0063230.1 | Salicylate carboxymethyltransferase | 3.50 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0078620.1 | E3 ubiquitin‐protein ligase Nedd‐4 | 3.30 | |
| MT‐specific | |||
| Miscellaneous | PSNMU‐V1.4_AUG‐EV‐PASAV3_0041130.1 | Heat shock factor protein 3 | 3.41 |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0103000.1 | Cathepsin D | 6.96 | |
| PSNMU‐V1.4_AUG‐EV‐PASAV3_0067710.1 | TPR repeat‐containing proteinc (protein–protein interactions) | −2.86 | |
a
Gene identity defined in Patil et al. (2015).
b
Gene models to be merged in a single model.
c
Automatic annotation yields nephrocystin.