Table 2.
Experiment | MD Simulation | |||
---|---|---|---|---|
|
||||
Assignmenta | First Derivativeb | Drude-2013c | Drude-New | |
EcoRI (12 bp) | ||||
| ||||
P1 | 0.48 | 0.46 | 0.51 | 0.49 |
P2d | - | 0.76 | 0.79 | 0.76 |
P3 | 1.14 | 1.12 | 1.12 | 1.07 |
P4 | 1.54 | 1.51 | 1.49 | 1.50 |
P5 | 1.87 | 1.83 | 1.80 | 1.88 |
| ||||
1DCV (8 bp) | ||||
| ||||
P1 | 0.51 | 0.52 | 0.52 | |
P2d | 0.76 | 0.82 | 0.81 | |
P3 | 1.18 | 1.11 | 1.09 | |
P4 | 1.53 | 1.50 | 1.47 | |
P5 | 1.79 | 1.80 | 1.86 |
Assigned peak positions for EcoRI are from work by Zuo and Tiede,90 as reported by Schwieters and Clore.81
Computed from zero-crossing points in the first derivative of the scattering profiles.
Drude-2013 results are taken from a previous study by Savelyev and MacKerell.28
Plateau position estimated from first-derivative plots.