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Comparison of the variant call sensitivity between the Variant Caller plugin and the pipeline developed in-house
| In-house pipeline | Variant Caller Ion Torrent Suite | |
|---|---|---|
| Variants found | 574 | 587 |
| False positives | 25 | 35 |
| Sensitivity | 95.64% | 94.03% |
| Reproducibility (NGS only) | 94.17% | 94.71% |
| Reproducibility (NGS+Sanger) | 100% | 100% |
